U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    9630002D21Rik RIKEN cDNA 9630002D21 gene [ Mus musculus (house mouse) ]

    Gene ID: 319560, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    9630002D21Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 9630002D21 geneprovided by MGI
    Primary source
    MGI:MGI:2442274
    See related
    AllianceGenome:MGI:2442274
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in embryo. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See 9630002D21Rik in Genome Data Viewer
    Location:
    12; 12 C3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (71624503..71765597)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (71577931..71718589)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930404H11 gene Neighboring gene predicted gene, 40439 Neighboring gene STARR-seq mESC enhancer starr_32424 Neighboring gene STARR-seq mESC enhancer starr_32425 Neighboring gene predicted gene, 46356 Neighboring gene STARR-seq mESC enhancer starr_32426 Neighboring gene UPF0538 protein C2orf76 homolog pseudogene Neighboring gene STARR-seq mESC enhancer starr_32427 Neighboring gene STARR-seq mESC enhancer starr_32428 Neighboring gene STARR-positive B cell enhancer ABC_E5334 Neighboring gene dishevelled associated activator of morphogenesis 1 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Minimal in vivo requirements for developmentally regulated cardiac long intergenic non-coding RNAs. George MR, et al. Development, 2019 Dec 9. PMID 31784461, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      71624503..71765597
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_872810.2 RNA Sequence

    2. XR_872813.2 RNA Sequence

    3. XR_872811.2 RNA Sequence

    4. XR_872808.2 RNA Sequence

    5. XR_872814.2 RNA Sequence

    6. XR_872809.2 RNA Sequence

    7. XR_872812.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.