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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001285457.3 → NP_001272386.1 GDNF family receptor alpha-1 isoform 2 precursor
See identical proteins and their annotated locations for NP_001272386.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) has a shorter 5' UTR and lacks an exon in the central coding region but maintains the reading frame, compared to variant 1. The encoded isoform (2) is shorter than isoform 1. This isoform (2) may undergo proteolytic processing similar to isoform 1.
- Source sequence(s)
-
AC102457, AC102610
- Consensus CDS
-
CCDS70967.1
- UniProtKB/TrEMBL
-
A0A097BVN3
- Related
- ENSMUSP00000117196.2, ENSMUST00000129100.8
- Conserved Domains (2) summary
-
- smart00907
Location:149 → 228
- GDNF; GDNF/GAS1 domain
- pfam02351
Location:238 → 332
- GDNF; GDNF/GAS1 domain
-
NM_001410348.1 → NP_001397277.1 GDNF family receptor alpha-1 isoform 2 precursor
Status: REVIEWED
- Source sequence(s)
-
AC102457, AC102610
- UniProtKB/TrEMBL
-
A0A097BVN3
-
NM_010279.4 → NP_034409.1 GDNF family receptor alpha-1 isoform 1 preproprotein
See identical proteins and their annotated locations for NP_034409.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AC102457, AC102610
- Consensus CDS
-
CCDS38028.1
- UniProtKB/Swiss-Prot
- O35246, O35252, P97785
- UniProtKB/TrEMBL
-
A0A097BVN3
- Related
- ENSMUSP00000026076.8, ENSMUST00000026076.14
- Conserved Domains (2) summary
-
- smart00907
Location:154 → 233
- GDNF; GDNF/GAS1 domain
- pfam02351
Location:243 → 337
- GDNF; GDNF/GAS1 domain
RNA
-
NR_104342.1 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) contains an alternate exon at the 3' end, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC102457, AC102610
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000085.7 Reference GRCm39 C57BL/6J
- Range
-
58224013..58444387 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006526681.2 → XP_006526744.1 GDNF family receptor alpha-1 isoform X1
See identical proteins and their annotated locations for XP_006526744.1
- UniProtKB/Swiss-Prot
- O35246, O35252, P97785
- UniProtKB/TrEMBL
-
A0A097BVN3
- Conserved Domains (2) summary
-
- smart00907
Location:154 → 233
- GDNF; GDNF/GAS1 domain
- pfam02351
Location:243 → 337
- GDNF; GDNF/GAS1 domain
-
XM_006526682.1 → XP_006526745.1 GDNF family receptor alpha-1 isoform X1
See identical proteins and their annotated locations for XP_006526745.1
- UniProtKB/Swiss-Prot
- O35246, O35252, P97785
- UniProtKB/TrEMBL
-
A0A097BVN3
- Conserved Domains (2) summary
-
- smart00907
Location:154 → 233
- GDNF; GDNF/GAS1 domain
- pfam02351
Location:243 → 337
- GDNF; GDNF/GAS1 domain
-
XM_006526684.1 → XP_006526747.1 GDNF family receptor alpha-1 isoform X1
See identical proteins and their annotated locations for XP_006526747.1
- UniProtKB/Swiss-Prot
- O35246, O35252, P97785
- UniProtKB/TrEMBL
-
A0A097BVN3
- Conserved Domains (2) summary
-
- smart00907
Location:154 → 233
- GDNF; GDNF/GAS1 domain
- pfam02351
Location:243 → 337
- GDNF; GDNF/GAS1 domain
-
XM_006526683.5 → XP_006526746.1 GDNF family receptor alpha-1 isoform X1
See identical proteins and their annotated locations for XP_006526746.1
- UniProtKB/Swiss-Prot
- O35246, O35252, P97785
- UniProtKB/TrEMBL
-
A0A097BVN3
- Related
- ENSMUSP00000130128.2, ENSMUST00000169850.8
- Conserved Domains (2) summary
-
- smart00907
Location:154 → 233
- GDNF; GDNF/GAS1 domain
- pfam02351
Location:243 → 337
- GDNF; GDNF/GAS1 domain