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    S100a16 S100 calcium binding protein A16 [ Mus musculus (house mouse) ]

    Gene ID: 67860, updated on 27-Nov-2024

    Summary

    Official Symbol
    S100a16provided by MGI
    Official Full Name
    S100 calcium binding protein A16provided by MGI
    Primary source
    MGI:MGI:1915110
    See related
    Ensembl:ENSMUSG00000074457 AllianceGenome:MGI:1915110
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    S100F; DT1P1A7; 2300002L21Rik
    Summary
    Enables calcium ion binding activity and identical protein binding activity. Acts upstream of or within response to calcium ion. Located in cytoplasm and nucleus. Is expressed in several structures, including brain ventricular layer; gut; heart; nose; and urinary system. Orthologous to human S100A16 (S100 calcium binding protein A16). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in colon adult (RPKM 66.5), stomach adult (RPKM 63.5) and 27 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See S100a16 in Genome Data Viewer
    Location:
    3 F1; 3 39.25 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (90444561..90450458)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (90537254..90543151)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene S100 calcium binding protein A1 Neighboring gene S100 calcium binding protein A13 Neighboring gene S100 calcium binding protein A14 Neighboring gene predicted gene, 24593 Neighboring gene predicted gene, 23464 Neighboring gene S100 calcium binding protein A3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables calcium ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables calcium ion binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables calcium ion binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables calcium-dependent protein binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein homodimerization activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein homodimerization activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to calcium ion IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
     
    located_in extracellular space ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in perinuclear region of cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001356605.1NP_001343534.1  protein S100-A16

      Status: VALIDATED

      Source sequence(s)
      AC160552, AI841112, CK623434
      Consensus CDS
      CCDS17536.1
      UniProtKB/Swiss-Prot
      Q3TVE3, Q9D708
      Related
      ENSMUSP00000096510.4, ENSMUST00000098911.10
      Conserved Domains (1) summary
      cd05022
      Location:694
      S-100A13; S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which ...
    2. NM_001356606.1NP_001343535.1  protein S100-A16

      Status: VALIDATED

      Source sequence(s)
      AC160552, AI841112
      Consensus CDS
      CCDS17536.1
      UniProtKB/Swiss-Prot
      Q3TVE3, Q9D708
      Conserved Domains (1) summary
      cd05022
      Location:694
      S-100A13; S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which ...
    3. NM_001356607.1NP_001343536.1  protein S100-A16

      Status: VALIDATED

      Source sequence(s)
      AC160552, AI841112, BE137327
      Consensus CDS
      CCDS17536.1
      UniProtKB/Swiss-Prot
      Q3TVE3, Q9D708
      Conserved Domains (1) summary
      cd05022
      Location:694
      S-100A13; S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which ...
    4. NM_001356608.1NP_001343537.1  protein S100-A16

      Status: VALIDATED

      Source sequence(s)
      AC160552, AI841112
      Consensus CDS
      CCDS17536.1
      UniProtKB/Swiss-Prot
      Q3TVE3, Q9D708
      Related
      ENSMUSP00000102957.2, ENSMUST00000107334.8
      Conserved Domains (1) summary
      cd05022
      Location:694
      S-100A13; S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which ...
    5. NM_001356609.1NP_001343538.1  protein S100-A16

      Status: VALIDATED

      Source sequence(s)
      AA433545, AC160552, AI841112
      Consensus CDS
      CCDS17536.1
      UniProtKB/Swiss-Prot
      Q3TVE3, Q9D708
      Related
      ENSMUSP00000102954.2, ENSMUST00000107331.8
      Conserved Domains (1) summary
      cd05022
      Location:694
      S-100A13; S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which ...
    6. NM_001356610.1NP_001343539.1  protein S100-A16

      Status: VALIDATED

      Source sequence(s)
      AC160552, AI841112, CX213938
      Consensus CDS
      CCDS17536.1
      UniProtKB/Swiss-Prot
      Q3TVE3, Q9D708
      Related
      ENSMUSP00000102956.2, ENSMUST00000107333.8
      Conserved Domains (1) summary
      cd05022
      Location:694
      S-100A13; S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which ...
    7. NM_026416.3NP_080692.1  protein S100-A16

      See identical proteins and their annotated locations for NP_080692.1

      Status: VALIDATED

      Source sequence(s)
      AC160552, AI841112, CA323788
      Consensus CDS
      CCDS17536.1
      UniProtKB/Swiss-Prot
      Q3TVE3, Q9D708
      Related
      ENSMUSP00000096509.3, ENSMUST00000098910.3
      Conserved Domains (1) summary
      cd05022
      Location:694
      S-100A13; S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which ...

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      90444561..90450458
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036163254.1XP_036019147.1  protein S100-A16 isoform X1

      UniProtKB/Swiss-Prot
      Q3TVE3, Q9D708
      Conserved Domains (1) summary
      cd05022
      Location:694
      S-100A13; S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which ...
    2. XM_036163257.1XP_036019150.1  protein S100-A16 isoform X1

      UniProtKB/Swiss-Prot
      Q3TVE3, Q9D708
      Conserved Domains (1) summary
      cd05022
      Location:694
      S-100A13; S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which ...
    3. XM_036163255.1XP_036019148.1  protein S100-A16 isoform X1

      UniProtKB/Swiss-Prot
      Q3TVE3, Q9D708
      Conserved Domains (1) summary
      cd05022
      Location:694
      S-100A13; S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which ...