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    CLSTN2-AS1 CLSTN2 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 101927808, updated on 17-Sep-2024

    Summary

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    Official Symbol
    CLSTN2-AS1provided by HGNC
    Official Full Name
    CLSTN2 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:49095
    See related
    Ensembl:ENSG00000250433 AllianceGenome:HGNC:49095
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See CLSTN2-AS1 in Genome Data Viewer
    Location:
    3q23
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (140505618..140508789, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (143252920..143256091, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (140224460..140227631, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene calsyntenin 2 Neighboring gene uncharacterized LOC124900599 Neighboring gene uncharacterized LOC105374132 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:140185495-140186694 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:140240291-140240792 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20617 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20618 Neighboring gene uncharacterized LOC102724068 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:140307280-140307869 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:140401669-140402169 Neighboring gene tripartite motif containing 42

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_108084.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL133103
      Related
      ENST00000513309.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      140505618..140508789 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      143252920..143256091 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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