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    ybiB nonspecific DNA-binding protein YbiB [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945424, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ybiB
    Official Full Name
    nonspecific DNA-binding protein YbiB
    Primary source
    ECOCYC:EG11580
    Locus tag
    b0800
    See related
    ASAP:ABE-0002734
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0789
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    Genomic context

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    Sequence:
    NC_000913.3 (835248..836210)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene N-glycosidase YbiA Neighboring gene ATP-dependent DNA helicase DinG Neighboring gene hydroxycarboxylate dehydrogenase B Neighboring gene ncRNA Neighboring gene protein YbiE

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. YbiB: a novel interactor of the GTPase ObgE. Deckers B, et al. Nucleic Acids Res, 2023 Apr 24. PMID 36864742, Free PMC Article
    2. YbiB from Escherichia coli, the Defining Member of the Novel TrpD2 Family of Prokaryotic DNA-binding Proteins. Schneider D, et al. J Biol Chem, 2015 Aug 7. PMID 26063803, Free PMC Article
    3. Structural analysis of the rhlE gene of Escherichia coli. Ohmori H. Jpn J Genet, 1994 Feb. PMID 8037924
    4. A role of RnlA in the RNase LS activity from Escherichia coli. Otsuka Y, et al. Genes Genet Syst, 2007 Aug. PMID 17895580
    5. Protein abundance profiling of the Escherichia coli cytosol. Ishihama Y, et al. BMC Genomics, 2008 Feb 27. PMID 18304323, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. YbiB: a novel interactor of the GTPase ObgE.
      Title: YbiB: a novel interactor of the GTPase ObgE.
    2. YbiB from Escherichia coli, the defining member of the novel Trpd2 family of prokaryotic DNA-binding proteins, forms an operon with the DNA helicase gene dinG and is under LexA control.
      Title: YbiB from Escherichia coli, the Defining Member of the Novel TrpD2 Family of Prokaryotic DNA-binding Proteins.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables anthranilate phosphoribosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tryptophan biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in tryptophan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nonspecific DNA-binding protein YbiB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      835248..836210
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415321.1 nonspecific DNA-binding protein YbiB [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415321.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6M9WX07, A0A8T6BPA6
      Conserved Domains (1) summary
      PRK08136
      Location:1 → 315
      PRK08136; glycosyl transferase family protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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