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    Sowahc sosondowah ankyrin repeat domain family member C [ Mus musculus (house mouse) ]

    Gene ID: 268301, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Sowahcprovided by MGI
    Official Full Name
    sosondowah ankyrin repeat domain family member Cprovided by MGI
    Primary source
    MGI:MGI:3606051
    See related
    Ensembl:ENSMUSG00000098188 AllianceGenome:MGI:3606051
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ankrd57; 4921515A04Rik; 9430099J10Rik; C820004L04Rik
    Summary
    Orthologous to human SOWAHC (sosondowah ankyrin repeat domain family member C). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human all
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    Genomic context

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    See Sowahc in Genome Data Viewer
    Location:
    10 B4; 10 29.5 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (59057744..59062256)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (59221922..59226434)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene septin 10 Neighboring gene predicted gene, 53588 Neighboring gene predicted gene, 23223 Neighboring gene STARR-positive B cell enhancer ABC_E6855 Neighboring gene predicted gene, 36257 Neighboring gene predicted gene, 40669 Neighboring gene STARR-seq mESC enhancer starr_26768 Neighboring gene predicted gene, 40670

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An atlas of combinatorial transcriptional regulation in mouse and man. Ravasi T, et al. Cell, 2010 Mar 5. PMID 20211142, Free PMC Article
    2. A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Yokoyama S, et al. Dev Cell, 2009 Dec. PMID 20059953, Free PMC Article
    3. BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING). Motani K, et al. J Biol Chem, 2020 Aug 7. PMID 32554809, Free PMC Article
    4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    ankyrin repeat domain-containing protein SOWAHC
    Names
    ankyrin repeat domain 57
    ankyrin repeat domain-containing protein 57
    protein sosondowah homolog C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172939.3 → NP_766527.3  ankyrin repeat domain-containing protein SOWAHC

      See identical proteins and their annotated locations for NP_766527.3

      Status: VALIDATED

      Source sequence(s)
      AK030944, AK050497, BE686181
      Consensus CDS
      CCDS59544.1
      UniProtKB/Swiss-Prot
      Q8BWN1, Q8C0J6
      Related
      ENSMUSP00000138351.2, ENSMUST00000182161.2
      Conserved Domains (3) summary
      cd00204
      Location:288 → 397
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:259 → 359
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:289 → 325
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      59057744..59062256
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8C0J6.2 GenPept UniProtKB/Swiss-Prot:Q8C0J6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
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