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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001163165.2 → NP_001156637.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related isoform c
See identical proteins and their annotated locations for NP_001156637.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1-3 all encode the same isoform (c).
- Source sequence(s)
-
AC155937
- Consensus CDS
-
CCDS24055.1
- UniProtKB/Swiss-Prot
- Q9NSF7, Q9NSF8, Q9Z104
- UniProtKB/TrEMBL
- Q3U1L0, Q3U1X5
- Related
- ENSMUSP00000100961.3, ENSMUST00000105324.9
- Conserved Domains (1) summary
-
- cd01390
Location:70 → 134
- HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
-
NM_001163166.1 → NP_001156638.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related isoform c
See identical proteins and their annotated locations for NP_001156638.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1-3 all encode the same isoform (c).
- Source sequence(s)
-
AK153816, BE956207
- Consensus CDS
-
CCDS24055.1
- UniProtKB/Swiss-Prot
- Q9NSF7, Q9NSF8, Q9Z104
- UniProtKB/TrEMBL
- Q3U1L0, Q3U1X5
- Related
- ENSMUSP00000100960.2, ENSMUST00000105323.8
- Conserved Domains (1) summary
-
- cd01390
Location:70 → 134
- HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
-
NM_001428541.1 → NP_001415470.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related isoform a
Status: VALIDATED
- Description
- Transcript Variant: This variant (4), as well as variants 5 and 6, encodes the longest isoform (a).
- Source sequence(s)
-
AC155937
-
NM_001428542.1 → NP_001415471.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related isoform a
Status: VALIDATED
- Source sequence(s)
-
AC155937
-
NM_001428543.1 → NP_001415472.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related isoform a
Status: VALIDATED
- Source sequence(s)
-
AC155937
-
NM_001428544.1 → NP_001415473.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related isoform b
Status: VALIDATED
- Source sequence(s)
-
AC155937
- UniProtKB/TrEMBL
-
Q3U1X5
-
NM_001428545.1 → NP_001415474.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related isoform d
Status: VALIDATED
- Source sequence(s)
-
AC155937
- UniProtKB/TrEMBL
-
Q3U1X5
-
NM_001428546.1 → NP_001415475.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related isoform e
Status: VALIDATED
- Description
- Transcript Variant: This variant (9), as well as variant 10, encodes isoform e.
- Source sequence(s)
-
AC155937
- UniProtKB/TrEMBL
-
Q05DT2
-
NM_001428547.1 → NP_001415476.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related isoform e
Status: VALIDATED
- Source sequence(s)
-
AC155937
- UniProtKB/TrEMBL
-
Q05DT2
-
NM_010440.4 → NP_034570.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related isoform c
See identical proteins and their annotated locations for NP_034570.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes isoform c. Variants 1-3 all encode the same isoform (c).
- Source sequence(s)
-
AC155937
- Consensus CDS
-
CCDS24055.1
- UniProtKB/Swiss-Prot
- Q9NSF7, Q9NSF8, Q9Z104
- UniProtKB/TrEMBL
- Q3U1L0, Q3U1X5
- Related
- ENSMUSP00000020454.5, ENSMUST00000020454.11
- Conserved Domains (1) summary
-
- cd01390
Location:70 → 134
- HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000076.7 Reference GRCm39 C57BL/6J
- Range
-
81181880..81186777 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_036155645.1 → XP_036011538.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related isoform X2
- Conserved Domains (2) summary
-
- PRK10246
Location:57 → 167
- PRK10246; exonuclease subunit SbcC; Provisional
- smart00935
Location:26 → 90
- OmpH; Outer membrane protein (OmpH-like)
-
XM_006513248.3 → XP_006513311.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related isoform X1
- Conserved Domains (3) summary
-
- smart00935
Location:190 → 254
- OmpH; Outer membrane protein (OmpH-like)
- cd01390
Location:70 → 134
- HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
- pfam15258
Location:314 → 400
- FAM222A; Protein family of FAM222A
-
XM_036155646.1 → XP_036011539.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related isoform X2
- Conserved Domains (2) summary
-
- PRK10246
Location:57 → 167
- PRK10246; exonuclease subunit SbcC; Provisional
- smart00935
Location:26 → 90
- OmpH; Outer membrane protein (OmpH-like)
-
XM_006513249.5 → XP_006513312.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related isoform X1
- Conserved Domains (3) summary
-
- smart00935
Location:190 → 254
- OmpH; Outer membrane protein (OmpH-like)
- cd01390
Location:70 → 134
- HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
- pfam15258
Location:314 → 400
- FAM222A; Protein family of FAM222A