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    B230110C06Rik RIKEN cDNA B230110C06 gene [ Mus musculus (house mouse) ]

    Gene ID: 77981, updated on 22-Oct-2024

    Summary

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    Official Symbol
    B230110C06Rikprovided by MGI
    Official Full Name
    RIKEN cDNA B230110C06 geneprovided by MGI
    Primary source
    MGI:MGI:1925231
    See related
    Ensembl:ENSMUSG00000097547 AllianceGenome:MGI:1925231
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See B230110C06Rik in Genome Data Viewer
    Location:
    14; 14 A1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (7017318..7032140, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (15437623..15452445)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_36012 Neighboring gene CapStarr-seq enhancer MGSCv37_chr14:16602478-16602631 Neighboring gene predicted gene, 31804 Neighboring gene STARR-seq mESC enhancer starr_36010 Neighboring gene STARR-seq mESC enhancer starr_36009 Neighboring gene STARR-seq mESC enhancer starr_36008 Neighboring gene STARR-seq mESC enhancer starr_36007 Neighboring gene STARR-seq mESC enhancer starr_36006 Neighboring gene STARR-seq mESC enhancer starr_36005 Neighboring gene leucine rich repeat containing 3B Neighboring gene STARR-seq mESC enhancer starr_36004 Neighboring gene predicted gene, 31658 Neighboring gene predicted gene, 31577 Neighboring gene STARR-seq mESC enhancer starr_36003 Neighboring gene STARR-seq mESC enhancer starr_36002 Neighboring gene CapStarr-seq enhancer MGSCv37_chr14:15916488-15916671 Neighboring gene predicted gene, 31517

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_152122.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC158537, AK020961
      Related
      ENSMUST00000181388.10

    2. NR_152123.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK020961, AK080648

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      7017318..7032140 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001033183.1: Suppressed sequence

      Description
      NM_001033183.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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