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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001162868.2 → NP_001156340.1 rab11 family-interacting protein 3 isoform b
See identical proteins and their annotated locations for NP_001156340.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an in-frame exon, compared to variant 1, that results in a shorter protein (isoform b), compared to isoform a.
- Source sequence(s)
-
AC140047, AC159277
- Consensus CDS
-
CCDS50040.1
- UniProtKB/Swiss-Prot
- Q8CHD8, Q8JZT3
- Related
- ENSMUSP00000112875.2, ENSMUST00000120691.9
- Conserved Domains (7) summary
-
- cd00051
Location:500 → 557
- EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
- pfam09457
Location:1007 → 1047
- RBD-FIP; FIP domain
- pfam05700
Location:770 → 880
- BCAS2; Breast carcinoma amplified sequence 2 (BCAS2)
- pfam07926
Location:831 → 979
- TPR_MLP1_2; TPR/MLP1/MLP2-like protein
- pfam13499
Location:501 → 557
- EF-hand_7; EF-hand domain pair
- pfam14077
Location:938 → 981
- WD40_alt; Alternative WD40 repeat motif
- cl00143
Location:831 → 933
- SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...
-
NM_001162869.2 → NP_001156341.1 rab11 family-interacting protein 3 isoform a
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
- Source sequence(s)
-
AC140047, AC159277
- Consensus CDS
-
CCDS50041.1
- UniProtKB/Swiss-Prot
-
Q8CHD8
- Related
- ENSMUSP00000113521.2, ENSMUST00000122103.9
- Conserved Domains (7) summary
-
- cd00051
Location:500 → 557
- EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
- pfam09457
Location:1052 → 1092
- RBD-FIP; FIP domain
- pfam05700
Location:815 → 925
- BCAS2; Breast carcinoma amplified sequence 2 (BCAS2)
- pfam07926
Location:876 → 1024
- TPR_MLP1_2; TPR/MLP1/MLP2-like protein
- pfam13499
Location:501 → 557
- EF-hand_7; EF-hand domain pair
- pfam14077
Location:983 → 1026
- WD40_alt; Alternative WD40 repeat motif
- cl00143
Location:876 → 978
- SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...
-
NM_153140.2 → NP_694780.1 rab11 family-interacting protein 3 isoform c
See identical proteins and their annotated locations for NP_694780.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) has a distinct 5' UTR and lacks many exons of the 5' coding region, compared to variant 1, that results in a protein (isoform c) that starts from an internal methionine, compared to isoform a.
- Source sequence(s)
-
AK083658, AK085516, BE853781, BM114891, CB840427, CF170100, CF747684
- Consensus CDS
-
CCDS50039.1
- UniProtKB/Swiss-Prot
-
Q8CHD8
- Related
- ENSMUSP00000113048.2, ENSMUST00000118828.8
- Conserved Domains (3) summary
-
- pfam09457
Location:404 → 444
- RBD-FIP; FIP domain
- pfam05700
Location:167 → 277
- BCAS2; Breast carcinoma amplified sequence 2 (BCAS2)
- cl19219
Location:251 → 330
- DUF342; Protein of unknown function (DUF342)
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000083.7 Reference GRCm39 C57BL/6J
- Range
-
26208010..26289010 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_036160467.1 → XP_036016360.1 rab11 family-interacting protein 3 isoform X3
- Conserved Domains (3) summary
-
- PTZ00449
Location:12 → 331
- PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
- COG1196
Location:796 → 1059
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
- pfam13499
Location:500 → 557
- EF-hand_7; EF-hand domain pair
-
XM_036160466.1 → XP_036016359.1 rab11 family-interacting protein 3 isoform X2
- Conserved Domains (3) summary
-
- PTZ00449
Location:12 → 331
- PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
- COG1196
Location:808 → 1071
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
- pfam13499
Location:500 → 557
- EF-hand_7; EF-hand domain pair
-
XM_036160465.1 → XP_036016358.1 rab11 family-interacting protein 3 isoform X1
- Conserved Domains (3) summary
-
- PTZ00449
Location:12 → 331
- PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
- COG1196
Location:853 → 1116
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
- pfam13499
Location:500 → 557
- EF-hand_7; EF-hand domain pair
-
XM_011246362.4 → XP_011244664.1 rab11 family-interacting protein 3 isoform X4
- Conserved Domains (2) summary
-
- PTZ00449
Location:12 → 331
- PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
- pfam13499
Location:500 → 557
- EF-hand_7; EF-hand domain pair
RNA
-
XR_876466.3 RNA Sequence