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    C130021I20Rik Riken cDNA C130021I20 gene [ Mus musculus (house mouse) ]

    Gene ID: 100504399, updated on 2-Nov-2024

    Summary

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    Official Symbol
    C130021I20Rikprovided by MGI
    Official Full Name
    Riken cDNA C130021I20 geneprovided by MGI
    Primary source
    MGI:MGI:3639863
    See related
    AllianceGenome:MGI:3639863
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in autopod skin and central nervous system. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in limb E14.5 (RPKM 32.4), mammary gland adult (RPKM 10.0) and 4 other tissues See more
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    Genomic context

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    See C130021I20Rik in Genome Data Viewer
    Location:
    2 B; 2 22.5 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (33531205..33535675)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (33641193..33645663)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 39789 Neighboring gene LIM homeobox transcription factor 1 beta Neighboring gene predicted gene, 39790 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:33544353-33544554 Neighboring gene RIKEN cDNA 9430024E24 gene Neighboring gene predicted gene, 52507 Neighboring gene multivesicular body subunit 12B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Analysis of the dynamics of limb transcriptomes during mouse development. Gyurján I, et al. BMC Dev Biol, 2011 Jul 29. PMID 21801425, Free PMC Article
    2. Lmx1a encodes a rostral set of mesodiencephalic dopaminergic neurons marked by the Wnt/B-catenin signaling activator R-spondin 2. Hoekstra EJ, et al. PLoS One, 2013. PMID 24066094, Free PMC Article
    3. Molecular mapping of developing dorsal horn-enriched genes by microarray and dorsal/ventral subtractive screening. Li MZ, et al. Dev Biol, 2006 Apr 15. PMID 16516881
    4. Global gene expression analysis of murine limb development. Taher L, et al. PLoS One, 2011. PMID 22174793, Free PMC Article
    5. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046275.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK147796, AL929212, CB526918

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      33531205..33535675
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_177842.2: Suppressed sequence

      Description
      NM_177842.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.