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    Tmem239 transmembrane 239 [ Mus musculus (house mouse) ]

    Gene ID: 66766, updated on 9-Dec-2024

    Summary

    Official Symbol
    Tmem239provided by MGI
    Official Full Name
    transmembrane 239provided by MGI
    Primary source
    MGI:MGI:1914016
    See related
    Ensembl:ENSMUSG00000049692 AllianceGenome:MGI:1914016
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4933425O20Rik
    Summary
    Predicted to be located in membrane. Orthologous to human TMEM239 (transmembrane protein 239). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 107.7) See more
    Orthologs
    NEW
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    Genomic context

    See Tmem239 in Genome Data Viewer
    Location:
    2 F1; 2 63.22 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (130248442..130249714)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (130406522..130407794)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700020A23 gene Neighboring gene carboxypeptidase X, M14 family member 1 Neighboring gene predicted gene, 54153 Neighboring gene PC-esterase domain containing 1A Neighboring gene STARR-positive B cell enhancer ABC_E11708 Neighboring gene VSP16 CORVET/HOPS core subunit Neighboring gene predicted gene, 52562 Neighboring gene protein tyrosine phosphatase receptor type A

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025753.3NP_080029.1  transmembrane protein 239

      See identical proteins and their annotated locations for NP_080029.1

      Status: PROVISIONAL

      Source sequence(s)
      BC049728
      Consensus CDS
      CCDS16742.1
      UniProtKB/Swiss-Prot
      Q9DA47
      Related
      ENSMUSP00000055299.5, ENSMUST00000055421.6
      Conserved Domains (1) summary
      pfam15841
      Location:1149
      TMEM239; Transmembrane protein 239 family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      130248442..130249714
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)