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    Rbakdn RB-associated KRAB zinc finger downstream neighbor (non-protein coding) [ Mus musculus (house mouse) ]

    Gene ID: 100042605, updated on 22-Oct-2024

    Summary

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    Official Symbol
    Rbakdnprovided by MGI
    Official Full Name
    RB-associated KRAB zinc finger downstream neighbor (non-protein coding)provided by MGI
    Primary source
    MGI:MGI:3782099
    See related
    Ensembl:ENSMUSG00000104529 AllianceGenome:MGI:3782099
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm3925
    Expression
    Restricted expression toward testis adult (RPKM 456.8) See more
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    Genomic context

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    See Rbakdn in Genome Data Viewer
    Location:
    5 G2; 5 81.97 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (143150534..143151506, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (143164779..143165751, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 38734 Neighboring gene olfactory receptor family 10 subfamily AH member 1, pseudogene 1 Neighboring gene STARR-seq mESC enhancer starr_14788 Neighboring gene predicted gene 7291 Neighboring gene RB-associated KRAB zinc finger Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:143942516-143942699 Neighboring gene speedy/RINGO cell cycle regulator family, member E4B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The transcriptional landscape of the mammalian genome. Carninci P, et al. Science, 2005 Sep 2. PMID 16141072

    GeneRIFs: Gene References Into Functions

    General gene information

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    Other Names

    • Rbak downstream neighbor (non-protein coding)

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040424.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AC123686
      Related
      ENSMUST00000200314.6

    2. NR_040425.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site in the 5' region, compared to variant 1.
      Source sequence(s)
      AC123686
      Related
      ENSMUST00000274978.1

    3. NR_040426.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate splice site in the 5' region, compared to variant 1.
      Source sequence(s)
      AC123686
      Related
      ENSMUST00000274975.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      143150534..143151506 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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