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    HSD52 uncharacterized LOC729467 [ Homo sapiens (human) ]

    Gene ID: 729467, updated on 10-Dec-2024

    Summary

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    Gene symbol
    HSD52
    Gene description
    uncharacterized LOC729467
    See related
    Ensembl:ENSG00000224609
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 5.5) See more
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    Genomic context

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    See HSD52 in Genome Data Viewer
    Location:
    1p32.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (59131936..59146807, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (59010301..59025170, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (59597608..59612479, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1096 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1097 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1098 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1099 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1100 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1101 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1102 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1103 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1104 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1106 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1105 Neighboring gene long intergenic non-protein coding RNA 1358 Neighboring gene VISTA enhancer hs1485 Neighboring gene PHB1 pseudogene 3 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:59542215-59542758 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:59543303-59543846 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:59543847-59544388 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:59572908-59573408 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:59573409-59573909 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:59604949-59605450 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:59605451-59605950 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1107 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 939 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:59672311-59672933 Neighboring gene Sharpr-MPRA regulatory region 10857 Neighboring gene Sharpr-MPRA regulatory region 13133 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1108 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1109 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 940 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 941 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:59764225-59765424 Neighboring gene FGGY divergent transcript Neighboring gene FGGY carbohydrate kinase domain containing Neighboring gene MPRA-validated peak254 silencer Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_8792 Neighboring gene MPRA-validated peak255 silencer Neighboring gene uncharacterized LOC124904192

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027120.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AC093425, DB453888
      Related
      ENST00000425914.7

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      59131936..59146807 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      59010301..59025170 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0P140.1 GenPept UniProtKB/Swiss-Prot:Q0P140

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.