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    Bfsp1 beaded filament structural protein 1, in lens-CP94 [ Mus musculus (house mouse) ]

    Gene ID: 12075, updated on 9-Dec-2024

    Summary

    Official Symbol
    Bfsp1provided by MGI
    Official Full Name
    beaded filament structural protein 1, in lens-CP94provided by MGI
    Primary source
    MGI:MGI:101770
    See related
    Ensembl:ENSMUSG00000027420 AllianceGenome:MGI:101770
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    CP95
    Summary
    A structural constituent of eye lens. Involved in intermediate filament organization. Acts upstream of or within cell maturation and lens fiber cell development. Located in cytoplasm; intermediate filament; and plasma membrane. Is expressed in several structures, including eye and male reproductive gland or organ. Human ortholog(s) of this gene implicated in cataract 33. Orthologous to human BFSP1 (beaded filament structural protein 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in colon adult (RPKM 1.7), large intestine adult (RPKM 1.2) and 22 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Bfsp1 in Genome Data Viewer
    Location:
    2 G1; 2 70.89 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (143668448..143757320, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (143826528..143915219, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene proprotein convertase subtilisin/kexin type 2 Neighboring gene proprotein convertase subtilisin/kexin type 2, opposite strand 2 Neighboring gene predicted gene, 52527 Neighboring gene STARR-positive B cell enhancer ABC_E4506 Neighboring gene ribosomal protein S13, pseudogene 6 Neighboring gene predicted gene, 33648 Neighboring gene STARR-seq mESC enhancer starr_05893 Neighboring gene predicted gene 11686 Neighboring gene STARR-positive B cell enhancer ABC_E9072 Neighboring gene STARR-seq mESC enhancer starr_05895 Neighboring gene destrin Neighboring gene predicted gene, 33804 Neighboring gene predicted gene, 54119 Neighboring gene ribosome binding protein 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (3)  1 citation

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables structural constituent of eye lens IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables structural constituent of eye lens IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell maturation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in intermediate filament organization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in lens fiber cell development IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within lens fiber cell development IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cell cortex IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in intermediate filament IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in intermediate filament IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    filensin
    Names
    beaded filament structural protein in lens-CP94
    lens fiber cell beaded-filament structural protein CP 95

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001291061.2NP_001277990.1  filensin isoform a

      See identical proteins and their annotated locations for NP_001277990.1

      Status: VALIDATED

      Source sequence(s)
      AL807801
      Consensus CDS
      CCDS71154.1
      UniProtKB/Swiss-Prot
      A2AMT1, O54770, Q3UPV0, Q6PFF8, Q8BKB1, Q9QWM4
      UniProtKB/TrEMBL
      O35656
      Related
      ENSMUSP00000096899.4, ENSMUST00000099296.4
      Conserved Domains (1) summary
      pfam00038
      Location:37317
      Filament; Intermediate filament protein
    2. NM_001416908.1NP_001403837.1  filensin isoform c

      Status: VALIDATED

      Source sequence(s)
      AL807801
    3. NM_009751.3NP_033881.2  filensin isoform b

      See identical proteins and their annotated locations for NP_033881.2

      Status: VALIDATED

      Source sequence(s)
      AL807801
      Consensus CDS
      CCDS16811.1
      UniProtKB/TrEMBL
      O35656
      Related
      ENSMUSP00000028907.8, ENSMUST00000028907.14
      Conserved Domains (2) summary
      pfam00038
      Location:37311
      Filament; Intermediate filament protein
      pfam16888
      Location:206279
      DUF5082; Domain of unknown function (DUF5082)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      143668448..143757320 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030246932.2XP_030102792.1  filensin isoform X2

      Conserved Domains (1) summary
      COG1196
      Location:2179
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    2. XM_011239261.4XP_011237563.1  filensin isoform X1

      See identical proteins and their annotated locations for XP_011237563.1

      Conserved Domains (1) summary
      COG1196
      Location:2185
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    3. XM_011239265.2XP_011237567.1  filensin isoform X3

      See identical proteins and their annotated locations for XP_011237567.1

      Conserved Domains (1) summary
      PRK09039
      Location:8155
      PRK09039; peptidoglycan -binding protein
    4. XM_011239264.4XP_011237566.1  filensin isoform X3

      See identical proteins and their annotated locations for XP_011237566.1

      Conserved Domains (1) summary
      PRK09039
      Location:8155
      PRK09039; peptidoglycan -binding protein
    5. XM_011239266.4XP_011237568.1  filensin isoform X3

      See identical proteins and their annotated locations for XP_011237568.1

      Conserved Domains (1) summary
      PRK09039
      Location:8155
      PRK09039; peptidoglycan -binding protein