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    RDN5-1 [ Saccharomyces cerevisiae S288C ]

    Gene ID: 9164945, updated on 9-Dec-2024

    Summary

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    Official Symbol
    RDN5-1
    Primary source
    SGD:S000006479
    Locus tag
    YNCL0018W
    See related
    AllianceGenome:SGD:S000006479
    Gene type
    rRNA
    RNA name
    5S ribosomal RNA
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    A structural constituent of ribosome. Involved in cytoplasmic translation. Part of cytosolic large ribosomal subunit. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See RDN5-1 in Genome Data Viewer
    Location:
    chromosome: XII
    Exon count:
    1
    Sequence:
    Chromosome: XII; NC_001144.5 (459676..459796)

    Chromosome XII - NC_001144.5Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene 18S ribosomal RNA Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene 25S ribosomal RNA Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001144.5

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. In vivo analyses of upstream promoter sequence elements in the 5 S rRNA gene from Saccharomyces cerevisiae. Lee Y, et al. J Mol Biol, 1997 Jun 27. PMID 9223632
    2. Ribosomal protein L5 helps anchor peptidyl-tRNA to the P-site in Saccharomyces cerevisiae. Meskauskas A, et al. RNA, 2001 Aug. PMID 11497428, Free PMC Article
    3. Ribosomal 5 S rRNA maturation in Saccharomyces cerevisiae. Lee Y, et al. J Biol Chem, 1997 Jun 13. PMID 9182543
    4. Assembly of 5S ribosomal RNA is required at a specific step of the pre-rRNA processing pathway. Dechampesme AM, et al. J Cell Biol, 1999 Jun 28. PMID 10385518, Free PMC Article
    5. RNAP-II transcribes two small RNAs at the promoter and terminator regions of the RNAP-I gene in Saccharomyces cerevisiae. Mayán MD. Yeast, 2013 Jan. PMID 23280698

    See all (34) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    • 5S ribosomal RNA (5S rRNA); only complete sequence of 6 repeated RDN5 alleles; able to support viability when provided as sole form of 5S rRNA; component of the large (60S) ribosomal subunit; localized to the nucleolus via interaction with Rpl5p; may play a role in translational frame fidelity; transcription is mediated by PolIII and activated by TFIIIA and TFIIIE

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables structural constituent of ribosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001144.5 Reference assembly

      Range
      459676..459796
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_132215.1 RNA Sequence

      Status: REVIEWED

    Gene LinkOut

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