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    VEL1 Vel1p [ Saccharomyces cerevisiae S288C ]

    Gene ID: 852634, updated on 9-Dec-2024

    Summary

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    Official Symbol
    VEL1
    Official Full Name
    Vel1p
    Primary source
    SGD:S000003227
    Locus tag
    YGL258W
    See related
    AllianceGenome:SGD:S000003227; FungiDB:YGL258W; VEuPathDB:YGL258W
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Located in cytosol. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See VEL1 in Genome Data Viewer
    Location:
    chromosome: VII
    Exon count:
    1
    Sequence:
    Chromosome: VII; NC_001139.9 (11110..11730)

    Chromosome VII - NC_001139.9Genomic Context describing neighboring genes Neighboring gene Yps5p Neighboring gene uncharacterized protein Neighboring gene alpha-1,3-mannosyltransferase MNT2 Neighboring gene alcohol dehydrogenase ADH4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001139.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide expression analysis of NAP1 in Saccharomyces cerevisiae. Ohkuni K, et al. Biochem Biophys Res Commun, 2003 Jun 20. PMID 12788058
    2. Application of genome-wide expression analysis to identify molecular markers useful in monitoring industrial fermentations. Higgins VJ, et al. Appl Environ Microbiol, 2003 Dec. PMID 14660410, Free PMC Article
    3. An Autophagy-Independent Role for ATG41 in Sulfur Metabolism During Zinc Deficiency. Bucci MD, et al. Genetics, 2018 Mar. PMID 29321173, Free PMC Article
    4. Cryptic transcription mediates repression of subtelomeric metal homeostasis genes. Toesca I, et al. PLoS Genet, 2011 Jun. PMID 21738494, Free PMC Article
    5. Sequence-based approach for identification of cell wall proteins in Saccharomyces cerevisiae. Terashima H, et al. Curr Genet, 2002 Feb. PMID 11935221

    See all (20) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cell periphery HDA PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in endoplasmic reticulum HDA PubMed 

    General protein information

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    Preferred Names
    Vel1p
    NP_011256.1
    • hypothetical protein; highly induced in zinc-depleted conditions and has increased expression in NAP1 deletion mutants; VEL1 has a paralog, YOR387C, that arose from a single-locus duplication

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001139.9 Reference assembly

      Range
      11110..11730
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001181124.1 → NP_011256.1  TPA: Vel1p [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_011256.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A6ZTT3, D6VV77, P53058
      UniProtKB/TrEMBL
      C7GP03
      Conserved Domains (1) summary
      pfam10339
      Location:6 → 206
      Vel1p; Yeast-specific zinc responsive
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P53058.1

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