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    SNR78 [ Saccharomyces cerevisiae S288C ]

    Gene ID: 9164958, updated on 9-Dec-2024

    Summary

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    Official Symbol
    SNR78
    Primary source
    SGD:S000007312
    Locus tag
    YNCM0011W
    See related
    AllianceGenome:SGD:S000007312
    Gene type
    ncRNA
    RNA name
    snoRNA
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Enables rRNA 2'-O-ribose methylation guide activity. Involved in rRNA methylation. Predicted to be located in nucleolus. Predicted to be part of box C/D methylation guide snoRNP complex. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See SNR78 in Genome Data Viewer
    Location:
    chromosome: XIII
    Exon count:
    1
    Sequence:
    Chromosome: XIII; NC_001145.3 (297278..297364)

    Chromosome XIII - NC_001145.3Genomic Context describing neighboring genes Neighboring gene translation initiation factor 3 subunit CLU1 Neighboring gene dolichol kinase Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001145.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel snoRNA gene cluster in yeast is transcribed as polycistronic pre-snoRNAs. Lu Y, et al. Sci China C Life Sci, 1999 Oct. PMID 18726517
    2. SnoRNA-guided ribose methylation of rRNA: structural features of the guide RNA duplex influencing the extent of the reaction. Cavaillé J, et al. Nucleic Acids Res, 1998 Apr 1. PMID 9512526, Free PMC Article
    3. Seven novel methylation guide small nucleolar RNAs are processed from a common polycistronic transcript by Rat1p and RNase III in yeast. Qu LH, et al. Mol Cell Biol, 1999 Feb. PMID 9891049, Free PMC Article
    4. Nuclear fate of yeast snoRNA is determined by co-transcriptional Rnt1 cleavage. Grzechnik P, et al. Nat Commun, 2018 May 3. PMID 29725044, Free PMC Article
    5. A computational screen for methylation guide snoRNAs in yeast. Lowe TM, et al. Science, 1999 Feb 19. PMID 10024243

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    • C/D box small nucleolar RNA (snoRNA); guides 2'-O-methylation of large subunit (LSU) rRNA at position U2421

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables rRNA 2'-O-ribose methylation guide activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables rRNA 2'-O-ribose methylation guide activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables rRNA 2'-O-ribose methylation guide activity ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rRNA methylation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in rRNA methylation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in rRNA methylation ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of box C/D methylation guide snoRNP complex IC
    Inferred by Curator
    more info
    		 PubMed 
    located_in nucleolus IC
    Inferred by Curator
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001145.3 Reference assembly

      Range
      297278..297364
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_132237.1 RNA Sequence

      Status: REVIEWED

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