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    1700072I22Rik RIKEN cDNA 1700072I22 gene [ Mus musculus (house mouse) ]

    Gene ID: 78629, updated on 22-Oct-2024

    Summary

    Official Symbol
    1700072I22Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700072I22 geneprovided by MGI
    Primary source
    MGI:MGI:1925879
    See related
    Ensembl:ENSMUSG00000134372 AllianceGenome:MGI:1925879
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Restricted expression toward testis adult (RPKM 5.2) See more
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    Genomic context

    See 1700072I22Rik in Genome Data Viewer
    Location:
    11; 11 E1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (103529762..103539839)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (103638936..103649013)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 37 Neighboring gene STARR-seq mESC enhancer starr_30854 Neighboring gene STARR-seq mESC enhancer starr_30855 Neighboring gene ribosomal protein S2 pseudogene Neighboring gene lysozyme-like 6 Neighboring gene reprimo-like Neighboring gene golgi SNAP receptor complex member 2 Neighboring gene RIKEN cDNA C130046K22 gene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_131109.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AK018891, AL627252
      Related
      ENSMUST00000324138.1
    2. NR_131143.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an internal exon, compared to variant 1.
      Source sequence(s)
      AK018891, AL627252

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      103529762..103539839
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)