U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    1700024G13Rik RIKEN cDNA 1700024G13 gene [ Mus musculus (house mouse) ]

    Gene ID: 67085, updated on 27-Nov-2024

    Summary

    Official Symbol
    1700024G13Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700024G13 geneprovided by MGI
    Primary source
    MGI:MGI:1914335
    See related
    Ensembl:ENSMUSG00000072473 AllianceGenome:MGI:1914335
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C10orf53
    Summary
    Is expressed in brain; genitourinary system; node; respiratory system; and sensory organ. Orthologous to human C10orf53 (chromosome 10 open reading frame 53). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis adult (RPKM 83.4) See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See 1700024G13Rik in Genome Data Viewer
    Location:
    14 B; 14 19.4 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (32098459..32110330, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (32376502..32388373, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene poly (ADP-ribose) glycohydrolase Neighboring gene STARR-seq mESC enhancer starr_36341 Neighboring gene predicted gene, 48914 Neighboring gene oxoglutarate dehydrogenase-like Neighboring gene predicted gene, 52134 Neighboring gene STARR-seq mESC enhancer starr_36344 Neighboring gene choline O-acetyltransferase Neighboring gene solute carrier family 18 (vesicular monoamine), member 3 Neighboring gene excision repair cross-complementing rodent repair deficiency, complementation group 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Clone Names

    • MGC130143, MGC130144

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    UPF0728 protein C10orf53 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034037.1NP_001029209.1  UPF0728 protein C10orf53 homolog

      See identical proteins and their annotated locations for NP_001029209.1

      Status: PROVISIONAL

      Source sequence(s)
      BC107223
      Consensus CDS
      CCDS36867.1
      UniProtKB/Swiss-Prot
      Q3KNL4
      Related
      ENSMUSP00000098289.3, ENSMUST00000100723.4
      Conserved Domains (1) summary
      pfam15092
      Location:189
      UPF0728; uncharacterized protein family UPF0728

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      32098459..32110330 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)