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    Gm19605 predicted gene, 19605 [ Mus musculus (house mouse) ]

    Gene ID: 102638940, updated on 22-Oct-2024

    Summary

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    Official Symbol
    Gm19605provided by MGI
    Official Full Name
    predicted gene, 19605provided by MGI
    Primary source
    MGI:MGI:5011790
    See related
    Ensembl:ENSMUSG00000113585 AllianceGenome:MGI:5011790
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in thymus adult (RPKM 1.8), testis adult (RPKM 0.6) and 28 other tissues See more
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    Genomic context

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    See Gm19605 in Genome Data Viewer
    Location:
    12 F1; 12 60.59 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (110432393..110452619, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (110465959..110486185, complement)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene predicted gene 9063 Neighboring gene STARR-seq mESC enhancer starr_33278 Neighboring gene STARR-seq mESC enhancer starr_33279 Neighboring gene predicted gene, 40577 Neighboring gene STARR-positive B cell enhancer ABC_E4043 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:111701992-111702194 Neighboring gene protein phosphatase 2, regulatory subunit B', gamma Neighboring gene STARR-seq mESC enhancer starr_33280 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:111716802-111717199 Neighboring gene STARR-positive B cell enhancer ABC_E5354 Neighboring gene STARR-positive B cell enhancer ABC_E1864 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:111737456-111737643 Neighboring gene STARR-seq mESC enhancer starr_33286 Neighboring gene STARR-seq mESC enhancer starr_33287 Neighboring gene STARR-seq mESC enhancer starr_33292 Neighboring gene RIKEN cDNA B930059L03 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:111829680-111829789 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:111829792-111829979 Neighboring gene STARR-seq mESC enhancer starr_33294 Neighboring gene predicted gene, 35558 Neighboring gene dynein cytoplasmic 1 heavy chain 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
    2. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
    3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_168658.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL591582

    2. NR_168659.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL591582
      Related
      ENSMUST00000247235.2

    3. NR_168660.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL591582

    4. NR_168661.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL591582
      Related
      ENSMUST00000222863.4

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      110432393..110452619 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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