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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_172851.3 → NP_766439.2 contactin-associated protein like 5-2 precursor
See identical proteins and their annotated locations for NP_766439.2
Status: VALIDATED
- Source sequence(s)
-
AC102217, AC135080, AC157363, AC158402, AC161355, AC163496
- Consensus CDS
-
CCDS35682.1
- UniProtKB/Swiss-Prot
- Q0V8T8, Q2PAX9, Q8BUT8
- Related
- ENSMUSP00000083944.4, ENSMUST00000086738.10
- Conserved Domains (6) summary
-
- smart00231
Location:56 → 174
- FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain
- smart00282
Location:205 → 338
- LamG; Laminin G domain
- cd00057
Location:56 → 173
- FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
- cd00110
Location:779 → 923
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
- pfam00008
Location:550 → 581
- EGF; EGF-like domain
- pfam02210
Location:395 → 521
- Laminin_G_2; Laminin G domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000067.7 Reference GRCm39 C57BL/6J
- Range
-
99700006..100418324
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006529594.5 → XP_006529657.1 contactin-associated protein like 5-2 isoform X1
- Conserved Domains (5) summary
-
- smart00282
Location:205 → 338
- LamG; Laminin G domain
- cd00057
Location:56 → 173
- FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
- cd00110
Location:780 → 924
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
- pfam00008
Location:551 → 582
- EGF; EGF-like domain
- pfam02210
Location:396 → 519
- Laminin_G_2; Laminin G domain
-
XM_036165066.1 → XP_036020959.1 contactin-associated protein like 5-2 isoform X3
- Conserved Domains (3) summary
-
- cd00110
Location:150 → 294
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
- pfam00008
Location:318 → 351
- EGF; EGF-like domain
- pfam02210
Location:402 → 530
- Laminin_G_2; Laminin G domain
-
XM_036165065.1 → XP_036020958.1 contactin-associated protein like 5-2 isoform X2
- UniProtKB/TrEMBL
-
B7ZP40
- Conserved Domains (3) summary
-
- cd00110
Location:198 → 342
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
- pfam00008
Location:366 → 399
- EGF; EGF-like domain
- pfam02210
Location:450 → 578
- Laminin_G_2; Laminin G domain
-
XM_011248005.2 → XP_011246307.1 contactin-associated protein like 5-2 isoform X3
- Conserved Domains (3) summary
-
- cd00110
Location:150 → 294
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
- pfam00008
Location:318 → 351
- EGF; EGF-like domain
- pfam02210
Location:402 → 530
- Laminin_G_2; Laminin G domain