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    Zc2hc1b zinc finger, C2HC-type containing 1B [ Mus musculus (house mouse) ]

    Gene ID: 75122, updated on 27-Nov-2024

    Summary

    Official Symbol
    Zc2hc1bprovided by MGI
    Official Full Name
    zinc finger, C2HC-type containing 1Bprovided by MGI
    Primary source
    MGI:MGI:1922372
    See related
    Ensembl:ENSMUSG00000019815 AllianceGenome:MGI:1922372
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Fam164b; 4930519B02Rik
    Summary
    Predicted to enable metal ion binding activity. Orthologous to human ZC2HC1B (zinc finger C2HC-type containing 1B). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis adult (RPKM 1.9) See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Zc2hc1b in Genome Data Viewer
    Location:
    10 A2; 10 4.72 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (13025388..13053782, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (13149644..13178038, complement)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 40602 Neighboring gene STARR-seq mESC enhancer starr_25810 Neighboring gene pleiomorphic adenoma gene-like 1 Neighboring gene hydatidiform mole associated and imprinted transcript Neighboring gene STARR-seq mESC enhancer starr_25812 Neighboring gene LTV1 ribosome biogenesis factor Neighboring gene phosphatase and actin regulator 2 Neighboring gene predicted gene, 46211

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    zinc finger C2HC domain-containing protein 1B
    Names
    family with sequence similarity 164, member B
    protein FAM164B

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029172.1NP_083448.1  zinc finger C2HC domain-containing protein 1B

      See identical proteins and their annotated locations for NP_083448.1

      Status: VALIDATED

      Source sequence(s)
      BC137685
      Consensus CDS
      CCDS48502.1
      UniProtKB/Swiss-Prot
      Q9D534
      UniProtKB/TrEMBL
      B9EHC9
      Related
      ENSMUSP00000019954.5, ENSMUST00000019954.6
      Conserved Domains (1) summary
      pfam13913
      Location:1538
      zf-C2HC_2; zinc-finger of a C2HC-type

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      13025388..13053782 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001779630.1 RNA Sequence

    2. XR_001779631.1 RNA Sequence