U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Vmn2r16 vomeronasal 2, receptor 16 [ Mus musculus (house mouse) ]

    Gene ID: 384220, updated on 27-Nov-2024

    Summary

    Official Symbol
    Vmn2r16provided by MGI
    Official Full Name
    vomeronasal 2, receptor 16provided by MGI
    Primary source
    MGI:MGI:3647194
    See related
    Ensembl:ENSMUSG00000092080 AllianceGenome:MGI:3647194
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG384220
    Summary
    Predicted to enable G protein-coupled receptor activity. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Vmn2r16 in Genome Data Viewer
    Location:
    5 F; 5 53.24 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (109478247..109512347)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (109330381..109364481)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene RAD21 homolog pseudogene Neighboring gene vomeronasal 2, receptor 15 Neighboring gene vomeronasal 2, receptor 84 pseudogene Neighboring gene vomeronasal 2, receptor 17

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    vomeronasal 2, receptor 16
    Names
    vomeronasal receptor Vmn2r16

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001385189.1NP_001372118.1  vomeronasal 2, receptor 16 precursor

      Status: VALIDATED

      Source sequence(s)
      AC110917
      Consensus CDS
      CCDS51602.1
      UniProtKB/TrEMBL
      A0A3B2WCY4, A0A8V5L197
      Related
      ENSMUSP00000159506.1, ENSMUST00000240713.1
      Conserved Domains (3) summary
      cd15283
      Location:582833
      7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
      cd06365
      Location:45501
      PBP1_pheromone_receptor; Ligand-binding domain of the V2R pheromone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily
      pfam07562
      Location:509562
      NCD3G; Nine Cysteines Domain of family 3 GPCR

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      109478247..109512347
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030254643.1XP_030110503.1  vomeronasal 2, receptor 16 isoform X1

      UniProtKB/TrEMBL
      A0A3B2WCY4
      Conserved Domains (3) summary
      cd15283
      Location:587838
      7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
      pfam07562
      Location:514567
      NCD3G; Nine Cysteines Domain of family 3 GPCR
      cd06365
      Location:45501
      PBP1_pheromone_receptor; Ligand-binding domain of the V2R pheromone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily
    2. XM_030254646.1XP_030110506.1  vomeronasal 2, receptor 16 isoform X3

      UniProtKB/TrEMBL
      A0A3B2WCY4
      Conserved Domains (2) summary
      cd15283
      Location:542793
      7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
      cd06365
      Location:45501
      PBP1_pheromone_receptor; Ligand-binding domain of the V2R pheromone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily
    3. XM_036165258.1XP_036021151.1  vomeronasal 2, receptor 16 isoform X2

      UniProtKB/TrEMBL
      A0A3B2WCY4, E9Q025
      Related
      ENSMUSP00000127838.2, ENSMUST00000165180.3
      Conserved Domains (3) summary
      cd15283
      Location:583834
      7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
      cd06365
      Location:45501
      PBP1_pheromone_receptor; Ligand-binding domain of the V2R pheromone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily
      pfam07562
      Location:509563
      NCD3G; Nine Cysteines Domain of family 3 GPCR

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001104627.1: Suppressed sequence

      Description
      NM_001104627.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.