Ssxa1 SSX member A1 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Ssxa1provided by MGI
Official Full Name: SSX member A1provided by MGI
Primary source: MGI:MGI:2446782
See related: AllianceGenome:MGI:2446782
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Ssxa; Gm1532
Summary: Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in sperm flagellum. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in X-linked spermatogenic failure 5 and synovial sarcoma. Orthologous to several human genes including SSX1 (SSX family member 1); SSX2 (SSX family member 2); and SSX2B (SSX family member 2B). [provided by Alliance of Genome Resources, Jan 2025]
Expression: Low expression observed in reference dataset See more
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Genomic context

Location:: X A1.3; X 16.61 cM

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	X	NC_000086.8 (20984653..20988327)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	X	NC_000086.7 (21118414..21122088)

Chromosome X - NC_000086.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Data conclude that the N-terminal cleaved fragment of Ssxa, which has a KRAB domain (nuclear localization signal), translocates into the nucleus after cleavage of the C-terminus.
Title: Sequence confirmation and characterization of the mouse Ssxa gene: Ssxa protein is cleaved and the N-terminal cleaved fragment translocates into the nucleus.

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General gene information

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Gene Ontology Provided by MGI

Process	Evidence Code	Pubs
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
located_in nucleus	ISO Inferred from Sequence Orthology more info
located_in sperm flagellum	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: protein SSXA1

Names: synovial sarcoma, X member A, breakpoint 1; synovial sarcoma, X member A1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001205086.1 → NP_001192015.1 protein SSXA1

Status: PROVISIONAL

Source sequence(s)

AB618486

UniProtKB/Swiss-Prot

B1AUS7, E9RK38

Conserved Domains (1) summary

cl02581
Location:23 → 75

KRAB_A-box; KRAB (Kruppel-associated box) domain -A box