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    Samt2b spermatogenesis associated multipass transmembrane protein 2b [ Mus musculus (house mouse) ]

    Gene ID: 75071, updated on 27-Nov-2024

    Summary

    Official Symbol
    Samt2bprovided by MGI
    Official Full Name
    spermatogenesis associated multipass transmembrane protein 2bprovided by MGI
    Primary source
    MGI:MGI:1922321
    See related
    Ensembl:ENSMUSG00000059663 AllianceGenome:MGI:1922321
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4930524N10Rik
    Summary
    Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be active in bicellular tight junction and plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis adult (RPKM 3.1) See more
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    Genomic context

    See Samt2b in Genome Data Viewer
    Location:
    X F3; X 72.38 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (153122221..153126388, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (154339225..154343392, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene high mobility group box 3 pseudogene Neighboring gene predicted gene 15141 Neighboring gene STARR-seq mESC enhancer starr_48125 Neighboring gene STARR-seq mESC enhancer starr_48127 Neighboring gene STARR-seq mESC enhancer starr_48128 Neighboring gene predicted pseudogene 5646 Neighboring gene RELT tumor necrosis factor receptor pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in bicellular tight junction assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in cell adhesion IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in bicellular tight junction IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    spermatogenesis associated multipass transmembrane protein 2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001256259.1NP_001243188.1  spermatogenesis associated multipass transmembrane protein 2-like

      See identical proteins and their annotated locations for NP_001243188.1

      Status: VALIDATED

      Source sequence(s)
      AK015889
      Consensus CDS
      CCDS57783.1
      UniProtKB/TrEMBL
      Q9D519
      Related
      ENSMUSP00000080966.2, ENSMUST00000082357.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      153122221..153126388 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)