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    Zfp787 zinc finger protein 787 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 365176, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Zfp787provided by RGD
    Official Full Name
    zinc finger protein 787provided by RGD
    Primary source
    RGD:1310536
    See related
    AllianceGenome:RGD:1310536
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Znf787; RGD1310536
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF787 (zinc finger protein 787). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 73.5), Heart (RPKM 58.2) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Zfp787 in Genome Data Viewer
    Location:
    1q12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (76778733..76804204)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (67745702..67771132)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (71416042..71447195)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene galanin-like peptide Neighboring gene zinc finger protein 444 Neighboring gene NLR family, pyrin domain containing 5 Neighboring gene NLR family, pyrin domain containing 4 Neighboring gene sperm motility kinase like 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables sequence-specific double-stranded DNA binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 787
    Names
    TIP20
    Transcription Termination Factor I Interacting Peptide 20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108904.1 → NP_001102374.1  zinc finger protein 787

      See identical proteins and their annotated locations for NP_001102374.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474102
      UniProtKB/TrEMBL
      A6KS80, D3ZDN6
      Conserved Domains (3) summary
      COG5048
      Location:93 → 200
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:66 → 88
      zf-C2H2; Zinc finger, C2H2 type

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      76778733..76804204
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006228193.5 → XP_006228255.1  zinc finger protein 787 isoform X1

      See identical proteins and their annotated locations for XP_006228255.1

      UniProtKB/TrEMBL
      A6KS80, D3ZDN6
      Conserved Domains (3) summary
      COG5048
      Location:93 → 200
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:66 → 88
      zf-C2H2; Zinc finger, C2H2 type

    2. XM_039084870.2 → XP_038940798.1  zinc finger protein 787 isoform X1

      UniProtKB/TrEMBL
      A6KS80, D3ZDN6
      Conserved Domains (3) summary
      COG5048
      Location:93 → 200
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:66 → 88
      zf-C2H2; Zinc finger, C2H2 type
    Nucleotide Protein Strain
    Heading Accession and Version

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