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    Mkrn2os makorin, ring finger protein 2, opposite strand [ Mus musculus (house mouse) ]

    Gene ID: 70291, updated on 27-Nov-2024

    Summary

    Official Symbol
    Mkrn2osprovided by MGI
    Official Full Name
    makorin, ring finger protein 2, opposite strandprovided by MGI
    Primary source
    MGI:MGI:1917541
    See related
    Ensembl:ENSMUSG00000068011 AllianceGenome:MGI:1917541
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2510049J12Rik
    Summary
    Is expressed in retina. Orthologous to human MKRN2OS (MKRN2 opposite strand). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in large intestine adult (RPKM 21.9), small intestine adult (RPKM 16.2) and 9 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Mkrn2os in Genome Data Viewer
    Location:
    6 E3; 6 53.6 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (115560508..115569537, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (115583547..115592576, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 36355 Neighboring gene tRNA splicing endonuclease subunit 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:115510052-115510235 Neighboring gene STARR-seq mESC enhancer starr_17082 Neighboring gene STARR-positive B cell enhancer mm9_chr6:115533495-115533796 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:115551710-115551893 Neighboring gene makorin, ring finger protein, 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:115570008-115570117 Neighboring gene v-raf-leukemia viral oncogene 1 Neighboring gene TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    MKRN2 opposite strand protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001101431.1NP_001094901.1  MKRN2 opposite strand protein

      See identical proteins and their annotated locations for NP_001094901.1

      Status: VALIDATED

      Source sequence(s)
      AA277646, AA833313, AK028760
      Consensus CDS
      CCDS51877.1
      UniProtKB/TrEMBL
      D3Z393
      Related
      ENSMUSP00000108580.2, ENSMUST00000112957.2
      Conserved Domains (1) summary
      pfam16044
      Location:8199
      DUF4796; Domain of unknown function (DUF4796)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      115560508..115569537 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)