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    Defb28 defensin beta 28 [ Mus musculus (house mouse) ]

    Gene ID: 545475, updated on 9-Dec-2024

    Summary

    Official Symbol
    Defb28provided by MGI
    Official Full Name
    defensin beta 28provided by MGI
    Primary source
    MGI:MGI:3650536
    See related
    Ensembl:ENSMUSG00000074679 AllianceGenome:MGI:3650536
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm1635
    Summary
    Orthologous to human DEFB115 (defensin beta 115). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward genital fat pad adult (RPKM 200.0) See more
    Orthologs
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    Genomic context

    See Defb28 in Genome Data Viewer
    Location:
    2 H1; 2 75.2 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (152360175..152363367)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (152518255..152521447)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene defensin beta 22 Neighboring gene defensin beta 26 Neighboring gene STARR-seq mESC enhancer starr_06063 Neighboring gene defensin beta 29 Neighboring gene predicted gene 14161 Neighboring gene STARR-seq mESC enhancer starr_06064 Neighboring gene predicted gene, 17416

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General protein information

    Preferred Names
    beta-defensin 115
    Names
    beta-defensin 28

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001037502.2NP_001032591.1  beta-defensin 115 precursor

      See identical proteins and their annotated locations for NP_001032591.1

      Status: VALIDATED

      Source sequence(s)
      AK131731
      Consensus CDS
      CCDS50751.1
      UniProtKB/TrEMBL
      Q3V2L0
      Related
      ENSMUSP00000112697.2, ENSMUST00000121912.2
      Conserved Domains (1) summary
      pfam13841
      Location:3766
      Defensin_beta_2; Beta defensin

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      152360175..152363367
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)