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    Ripor3 RIPOR family member 3 [ Mus musculus (house mouse) ]

    Gene ID: 69553, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Ripor3provided by MGI
    Official Full Name
    RIPOR family member 3provided by MGI
    Primary source
    MGI:MGI:1916803
    See related
    Ensembl:ENSMUSG00000074577 AllianceGenome:MGI:1916803
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm124; Fam65c; 2310033K02Rik
    Summary
    Orthologous to human RIPOR3 (RIPOR family member 3). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in limb E14.5 (RPKM 4.0), kidney adult (RPKM 2.6) and 21 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Ripor3 in Genome Data Viewer
    Location:
    2 H3; 2 88.07 cM
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (167822081..167892809, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (167980161..168050889, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 33033 Neighboring gene predicted gene, 32928 Neighboring gene STARR-positive B cell enhancer ABC_E4524 Neighboring gene STARR-positive B cell enhancer ABC_E2062 Neighboring gene STARR-seq mESC enhancer starr_06447 Neighboring gene protein tyrosine phosphatase, non-receptor type 1 Neighboring gene STARR-positive B cell enhancer ABC_E4525 Neighboring gene predicted gene, 33108 Neighboring gene predicted gene, 39990

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
    2. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
    3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    RIPOR family member 3
    Names
    family with sequence similarity 65, member C
    protein FAM65C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001080708.3 → NP_001074177.1  RIPOR family member 3

      See identical proteins and their annotated locations for NP_001074177.1

      Status: VALIDATED

      Source sequence(s)
      AK158217, AL928998, BC130272
      Consensus CDS
      CCDS38341.1
      UniProtKB/Swiss-Prot
      A1L3T7
      Related
      ENSMUSP00000096672.3, ENSMUST00000099073.3
      Conserved Domains (1) summary
      pfam15903
      Location:19 → 363
      PL48; Filopodia upregulated, FAM65

    RNA

    1. NR_156115.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL831766, AL928998
      Related
      ENSMUST00000123782.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      167822081..167892809 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006500139.3 → XP_006500202.1  RIPOR family member 3 isoform X1

      See identical proteins and their annotated locations for XP_006500202.1

      UniProtKB/Swiss-Prot
      A1L3T7
      Conserved Domains (1) summary
      pfam15903
      Location:19 → 363
      PL48; Filopodia upregulated, FAM65

    2. XM_036162538.1 → XP_036018431.1  RIPOR family member 3 isoform X3

      Conserved Domains (1) summary
      pfam15903
      Location:1 → 205
      PL48; Filopodia upregulated, FAM65

    3. XM_006500137.1 → XP_006500200.1  RIPOR family member 3 isoform X1

      See identical proteins and their annotated locations for XP_006500200.1

      UniProtKB/Swiss-Prot
      A1L3T7
      Conserved Domains (1) summary
      pfam15903
      Location:19 → 363
      PL48; Filopodia upregulated, FAM65

    4. XM_006500138.1 → XP_006500201.1  RIPOR family member 3 isoform X1

      See identical proteins and their annotated locations for XP_006500201.1

      UniProtKB/Swiss-Prot
      A1L3T7
      Conserved Domains (1) summary
      pfam15903
      Location:19 → 363
      PL48; Filopodia upregulated, FAM65

    5. XM_006500140.3 → XP_006500203.1  RIPOR family member 3 isoform X2

      Conserved Domains (1) summary
      pfam15903
      Location:8 → 337
      PL48; Filopodia upregulated, FAM65

    6. XM_006500141.1 → XP_006500204.1  RIPOR family member 3 isoform X4

      Conserved Domains (1) summary
      pfam15903
      Location:19 → 363
      PL48; Filopodia upregulated, FAM65

    RNA

    1. XR_866340.1 RNA Sequence

    2. XR_866339.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A1L3T7.1 GenPept UniProtKB/Swiss-Prot:A1L3T7

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