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    5730409E04Rik RIKEN cDNA 5730409E04Rik gene [ Mus musculus (house mouse) ]

    Gene ID: 230757, updated on 27-Nov-2024

    Summary

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    Official Symbol
    5730409E04Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 5730409E04Rik geneprovided by MGI
    Primary source
    MGI:MGI:3609248
    See related
    Ensembl:ENSMUSG00000073755 AllianceGenome:MGI:3609248
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    7530403E16Rik
    Summary
    Is expressed in dorsal root ganglion; facial ganglion; glossopharyngeal ganglion; and trigeminal ganglion. Orthologous to human C1orf216 (chromosome 1 open reading frame 216). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in adrenal adult (RPKM 17.7), cerebellum adult (RPKM 17.3) and 26 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See 5730409E04Rik in Genome Data Viewer
    Location:
    4 D2.2; 4 60.9 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (126503638..126508164)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (126609854..126614371)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene claspin Neighboring gene microRNA 7119 Neighboring gene 60S ribosomal protein L36a-like Neighboring gene STARR-seq mESC enhancer starr_11405 Neighboring gene predicted gene, 46870 Neighboring gene ribosomal protein S2 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The protein interactome of collapsin response mediator protein-2 (CRMP2/DPYSL2) reveals novel partner proteins in brain tissue. Martins-de-Souza D, et al. Proteomics Clin Appl, 2015 Oct. PMID 25921334
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    UPF0500 protein C1orf216 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013755.4 → NP_001013777.2  UPF0500 protein C1orf216 homolog

      See identical proteins and their annotated locations for NP_001013777.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants encode the same protein.
      Source sequence(s)
      AL606935
      Consensus CDS
      CCDS18656.1
      UniProtKB/Swiss-Prot
      A2A7K4, Q8BP99
      Related
      ENSMUSP00000095496.4, ENSMUST00000097886.4
      Conserved Domains (1) summary
      pfam15546
      Location:1 → 229
      DUF4653; Domain of unknown function (DUF4653)

    2. NM_001145950.2 → NP_001139422.1  UPF0500 protein C1orf216 homolog

      See identical proteins and their annotated locations for NP_001139422.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AL606935
      Consensus CDS
      CCDS18656.1
      UniProtKB/Swiss-Prot
      A2A7K4, Q8BP99
      Related
      ENSMUSP00000128538.2, ENSMUST00000164362.2
      Conserved Domains (1) summary
      pfam15546
      Location:1 → 229
      DUF4653; Domain of unknown function (DUF4653)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      126503638..126508164
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8BP99.2 GenPept UniProtKB/Swiss-Prot:Q8BP99

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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