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    5031434C07Rik RIKEN cDNA 5031434C07 gene [ Mus musculus (house mouse) ]

    Gene ID: 100503613, updated on 17-Aug-2024

    Summary

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    Official Symbol
    5031434C07Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 5031434C07 geneprovided by MGI
    Primary source
    MGI:MGI:2442810
    See related
    AllianceGenome:MGI:2442810
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See 5031434C07Rik in Genome Data Viewer
    Location:
    6 E3; 6 52.15 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (112263755..112267280, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (112286794..112290319, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_16998 Neighboring gene predicted gene 20387 Neighboring gene STARR-seq mESC enhancer starr_16999 Neighboring gene glutamate receptor, metabotropic 7 Neighboring gene STARR-seq mESC enhancer starr_17000 Neighboring gene STARR-seq mESC enhancer starr_17001 Neighboring gene STARR-seq mESC enhancer starr_17002 Neighboring gene STARR-seq mESC enhancer starr_17005 Neighboring gene STARR-seq mESC enhancer starr_17006 Neighboring gene STARR-seq mESC enhancer starr_17008 Neighboring gene STARR-seq mESC enhancer starr_17009 Neighboring gene STARR-seq mESC enhancer starr_17010 Neighboring gene RIKEN cDNA 1700054K19 gene Neighboring gene STARR-seq mESC enhancer starr_17012 Neighboring gene STARR-seq mESC enhancer starr_17013 Neighboring gene STARR-seq mESC enhancer starr_17014 Neighboring gene STARR-seq mESC enhancer starr_17015 Neighboring gene LIM and cysteine-rich domains 1 Neighboring gene predicted gene, 38873 Neighboring gene 60S ribosomal protein L23a pseudogene Neighboring gene ssu-2 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
    2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045986.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AK087115, AK165118

    2. NR_045987.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site, compared to variant 1.
      Source sequence(s)
      AK087115, AK165118

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      112263755..112267280 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_177012.1: Suppressed sequence

      Description
      NM_177012.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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