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    SLC35F6 solute carrier family 35 member F6 [ Sus scrofa (pig) ]

    Gene ID: 100513653, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SLC35F6provided by VGNC
    Official Full Name
    solute carrier family 35 member F6provided by VGNC
    Primary source
    VGNC:VGNC:93085
    See related
    Ensembl:ENSSSCG00000008562
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in lung (RPKM 19.0), kidney (RPKM 18.3) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See SLC35F6 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (112280654..112296874, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (119279988..119296212, complement)

    Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene dihydropyrimidinase like 5 Neighboring gene centromere protein A Neighboring gene uncharacterized LOC106509869 Neighboring gene uncharacterized LOC102168019 Neighboring gene potassium two pore domain channel subfamily K member 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    solute carrier family 35 member F6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

      Range
      112280654..112296874 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003125327.4 → XP_003125375.1  solute carrier family 35 member F6 isoform X1

      UniProtKB/TrEMBL
      A0A480U7I1, A0A4X1TP79, A0A8D1GJ74, F1SDQ0
      Related
      ENSSSCP00000009127.2, ENSSSCT00000009367.5
      Conserved Domains (1) summary
      cl23754
      Location:102 → 333
      EamA; EamA-like transporter family

    2. XM_021087725.1 → XP_020943384.1  solute carrier family 35 member F6 isoform X2

      UniProtKB/TrEMBL
      A0A8D1B7D2
      Conserved Domains (1) summary
      pfam06027
      Location:42 → 169
      SLC35F; Solute carrier family 35
    Nucleotide Protein
    Heading Accession and Version

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