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    TEX10 testis expressed 10 [ Sus scrofa (pig) ]

    Gene ID: 100157099, updated on 3-Dec-2024

    Summary

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    Official Symbol
    TEX10provided by VGNC
    Official Full Name
    testis expressed 10provided by VGNC
    Primary source
    VGNC:VGNC:98364
    See related
    Ensembl:ENSSSCG00000005389
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in ovary (RPKM 18.6), spleen (RPKM 7.1) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See TEX10 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (242058035..242120547, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (270407894..270480569, complement)

    Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene syntaxin 17 Neighboring gene endoplasmic reticulum protein 44 Neighboring gene uterine plasmin/trypsin inhibitor pseudogene Neighboring gene inversin Neighboring gene Myb/SANT DNA binding domain containing 3 Neighboring gene transmembrane protein with EGF like and two follistatin like domains 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    part_of MLL1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    testis-expressed protein 10
    Names
    Testis-expressed sequence 10 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

      Range
      242058035..242120547 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001925941.6 → XP_001925976.2  testis-expressed protein 10

      UniProtKB/TrEMBL
      A0A287AR35, A0A4X1VF23, A0A8D1DA15
      Related
      ENSSSCP00000046412.1, ENSSSCT00000063565.3
      Conserved Domains (1) summary
      pfam12333
      Location:132 → 235
      Ipi1_N; Rix1 complex component involved in 60S ribosome maturation
    Nucleotide Protein
    Heading Accession and Version

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