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    NR4A3 nuclear receptor subfamily 4 group A member 3 [ Sus scrofa (pig) ]

    Gene ID: 397479, updated on 17-Aug-2024

    Summary

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    Official Symbol
    NR4A3provided by VGNC
    Official Full Name
    nuclear receptor subfamily 4 group A member 3provided by VGNC
    Primary source
    VGNC:VGNC:90885
    See related
    Ensembl:ENSSSCG00000005385
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    NOR-1
    Expression
    Broad expression in heart (RPKM 8.7), psoas major muscle (RPKM 6.3) and 5 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See NR4A3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (241569867..241611735)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (269813286..269852707)

    Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene SEC61 translocon subunit beta Neighboring gene uncharacterized LOC106509214 Neighboring gene syntaxin 17 Neighboring gene uterine plasmin/trypsin inhibitor pseudogene Neighboring gene endoplasmic reticulum protein 44

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear glucocorticoid receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to corticotropin-releasing hormone stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear receptor subfamily 4 group A member 3
    Names
    neuron-derived orphan receptor-1 alfa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_214247.1 → NP_999412.1  nuclear receptor subfamily 4 group A member 3

      See identical proteins and their annotated locations for NP_999412.1

      Status: PROVISIONAL

      Source sequence(s)
      AJ011767
      UniProtKB/TrEMBL
      A0A4X1VIH4, A0A8D1S2T3, F6Q727, O97726
      Conserved Domains (2) summary
      cd06969
      Location:307 → 381
      NR_DBD_NGFI-B; DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B
      cl11397
      Location:413 → 643
      NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

      Range
      241569867..241611735
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021083198.1 → XP_020938857.1  nuclear receptor subfamily 4 group A member 3 isoform X1

      UniProtKB/TrEMBL
      A0A4X1VIH4, A0A8D1S2T3, F6Q727, O97726
      Conserved Domains (2) summary
      cd06969
      Location:307 → 381
      NR_DBD_NGFI-B; DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B
      cl11397
      Location:413 → 643
      NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

    2. XM_013993694.2 → XP_013849148.1  nuclear receptor subfamily 4 group A member 3 isoform X1

      UniProtKB/TrEMBL
      A0A4X1VIH4, A0A8D1S2T3, F6Q727, O97726
      Related
      ENSSSCP00000005778.3, ENSSSCT00000005925.4
      Conserved Domains (2) summary
      cd06969
      Location:307 → 381
      NR_DBD_NGFI-B; DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B
      cl11397
      Location:413 → 643
      NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
    Nucleotide Protein
    Heading Accession and Version

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