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    SUMO3 small ubiquitin like modifier 3 [ Sus scrofa (pig) ]

    Gene ID: 100624225, updated on 8-Mar-2024

    Summary

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    Gene symbol
    SUMO3
    Gene description
    small ubiquitin like modifier 3
    See related
    Ensembl:ENSSSCG00000035795
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in ovary (RPKM 41.5), subcutaneous adipose (RPKM 41.0) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See SUMO3 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (207475303..207484362, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (217406416..217415476, complement)

    Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene thrombospondin type laminin G domain and EAR repeats Neighboring gene keratin-associated protein 10-3-like Neighboring gene ubiquitin conjugating enzyme E2 G2 Neighboring gene PTTG1 interacting protein Neighboring gene eukaryotic translation initiation factor 4 gamma 2 pseudogene Neighboring gene integrin subunit beta 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein tag activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-like protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein sumoylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ubiquitin-related modifier 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

      Range
      207475303..207484362 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003359010.2 → XP_003359058.1  small ubiquitin-related modifier 3

      UniProtKB/TrEMBL
      A0A287AD21, A0A4X1T8P4, A0A8D1ACV7
      Related
      ENSSSCP00000041868.2, ENSSSCT00000064123.3
      Conserved Domains (2) summary
      cd01763
      Location:7 → 92
      Sumo; Small ubiquitin-related modifier (SUMO)
      smart00213
      Location:17 → 85
      UBQ; Ubiquitin homologues
    Nucleotide Protein
    Heading Accession and Version

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