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    Tex2 testis expressed 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 303611, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Tex2provided by RGD
    Official Full Name
    testis expressed 2provided by RGD
    Primary source
    RGD:1305112
    See related
    EnsemblRapid:ENSRNOG00000013659 AllianceGenome:RGD:1305112
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable lipid binding activity. Predicted to be involved in lipid transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human TEX2 (testis expressed 2). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Kidney (RPKM 196.5), Liver (RPKM 165.5) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tex2 in Genome Data Viewer
    Location:
    10q32.1
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (91936390..92046360, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (91436629..91546240, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (94697962..94807544, complement)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102546698 Neighboring gene small nucleolar RNA, C/D box 104 Neighboring gene small nucleolar RNA, H/ACA box 50C Neighboring gene transfer RNA proline (anticodon AGG) 83 Neighboring gene platelet and endothelial cell adhesion molecule 1 Neighboring gene mast cell immunoglobulin-like receptor 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables lipid binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in lipid transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    testis-expressed protein 2
    Names
    testis expressed gene 2
    testis-expressed sequence 2 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001100554.1 → NP_001094024.1  testis-expressed protein 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
      UniProtKB/TrEMBL
      A6HK48, G3V9L1
      Related
      ENSRNOP00000051987.1, ENSRNOT00000055114.4

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      91936390..92046360 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063269210.1 → XP_063125280.1  testis-expressed protein 2 isoform X1

      UniProtKB/TrEMBL
      A6HK48, G3V9L1

    2. XM_006247647.4 → XP_006247709.1  testis-expressed protein 2 isoform X2

      See identical proteins and their annotated locations for XP_006247709.1

      Conserved Domains (1) summary
      pfam10296
      Location:822 → 911
      DUF2404; Putative integral membrane protein conserved region (DUF2404)

    3. XM_063269209.1 → XP_063125279.1  testis-expressed protein 2 isoform X1

      UniProtKB/TrEMBL
      A6HK48, G3V9L1

    4. XM_006247646.5 → XP_006247708.1  testis-expressed protein 2 isoform X1

      See identical proteins and their annotated locations for XP_006247708.1

      UniProtKB/TrEMBL
      A6HK48, G3V9L1
      Conserved Domains (1) summary
      pfam10296
      Location:822 → 911
      DUF2404; Putative integral membrane protein conserved region (DUF2404)

    5. XM_039087782.2 → XP_038943710.1  testis-expressed protein 2 isoform X3

    6. XM_039087783.2 → XP_038943711.1  testis-expressed protein 2 isoform X4

    RNA

    1. XR_005490787.2 RNA Sequence

    2. XR_010055189.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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