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    SNORD3C small nucleolar RNA, C/D box 3C [ Homo sapiens (human) ]

    Gene ID: 780853, updated on 10-Dec-2024

    Summary

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    Official Symbol
    SNORD3Cprovided by HGNC
    Official Full Name
    small nucleolar RNA, C/D box 3Cprovided by HGNC
    Primary source
    HGNC:HGNC:33191
    See related
    AllianceGenome:HGNC:33191
    Gene type
    snoRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    U3-3; RNU3-3
    Summary
    Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See SNORD3C in Genome Data Viewer
    Location:
    17p11.2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (19190029..19190245, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (19138015..19138225, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (19093342..19093558, complement)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene kynureninase pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:19079065-19079566 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:19079567-19080066 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8284 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:19092892-19093486 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:19093487-19094080 Neighboring gene small nucleolar RNA, C/D box 3A Neighboring gene kynureninase pseudogene 3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:19117744-19118272 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:19118273-19118802 Neighboring gene uncharacterized protein ENSP00000382042

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Human genes encoding U3 snRNA associate with coiled bodies in interphase cells and are clustered on chromosome 17p11.2 in a complex inverted repeat structure. Gao L, et al. Nucleic Acids Res, 1997 Dec 1. PMID 9365252, Free PMC Article
    2. U3, U8 and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus. Tyc K, et al. EMBO J, 1989 Oct. PMID 2531075, Free PMC Article
    3. The association of UBAP2L and G3BP1 mediated by small nucleolar RNA is essential for stress granule formation. Asano-Inami E, et al. Commun Biol, 2023 Apr 14. PMID 37059803, Free PMC Article
    4. An updated human snoRNAome. Jorjani H, et al. Nucleic Acids Res, 2016 Jun 20. PMID 27174936, Free PMC Article
    5. Multiple myeloma-associated chromosomal translocation activates orphan snoRNA ACA11 to suppress oxidative stress. Chu L, et al. J Clin Invest, 2012 Aug. PMID 22751105, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Other Names

    • U3 small nucleolar RNA C
    • U3 snoRNA C

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_006881.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC106017

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      19190029..19190245 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      19138015..19138225 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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