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    Fam216b family with sequence similarity 216, member B [ Mus musculus (house mouse) ]

    Gene ID: 219170, updated on 27-Nov-2024

    Summary

    Official Symbol
    Fam216bprovided by MGI
    Official Full Name
    family with sequence similarity 216, member Bprovided by MGI
    Primary source
    MGI:MGI:2145738
    See related
    Ensembl:ENSMUSG00000045655 AllianceGenome:MGI:2145738
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    9330158N17
    Summary
    Orthologous to human FAM216B (family with sequence similarity 216 member B). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in lung adult (RPKM 1.7), ovary adult (RPKM 1.1) and 6 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Fam216b in Genome Data Viewer
    Location:
    14 D3; 14 41.15 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (78318464..78326447, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (78081024..78089007, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member C15 Neighboring gene CapStarr-seq enhancer MGSCv37_chr14:78261113-78261296 Neighboring gene STARR-seq mESC enhancer starr_37217 Neighboring gene epithelial stromal interaction 1 Neighboring gene STARR-seq mESC enhancer starr_37218 Neighboring gene predicted gene, 30608 Neighboring gene STARR-seq mESC enhancer starr_37221 Neighboring gene microRNA 1971

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177629.4NP_808297.1  protein FAM216B

      See identical proteins and their annotated locations for NP_808297.1

      Status: PROVISIONAL

      Source sequence(s)
      AC133176
      Consensus CDS
      CCDS27293.1
      UniProtKB/Swiss-Prot
      Q8CC14
      Related
      ENSMUSP00000064524.5, ENSMUST00000066437.5
      Conserved Domains (1) summary
      pfam15107
      Location:2100
      FAM216B; FAM216B protein family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      78318464..78326447 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)