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    C130074G19Rik RIKEN cDNA C130074G19 gene [ Mus musculus (house mouse) ]

    Gene ID: 226777, updated on 27-Nov-2024

    Summary

    Official Symbol
    C130074G19Rikprovided by MGI
    Official Full Name
    RIKEN cDNA C130074G19 geneprovided by MGI
    Primary source
    MGI:MGI:2444831
    See related
    Ensembl:ENSMUSG00000039349 AllianceGenome:MGI:2444831
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be involved in regulation of response to drug. Predicted to be located in 9+0 non-motile cilium and membrane. Orthologous to human C1orf115 (chromosome 1 open reading frame 115). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in kidney adult (RPKM 42.1), subcutaneous fat pad adult (RPKM 34.0) and 22 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See C130074G19Rik in Genome Data Viewer
    Location:
    1 H5; 1 89.22 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (184604123..184615233, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (184871926..184883036, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene mitochondrial amidoxime reducing component 2 Neighboring gene microRNA 1981 Neighboring gene STARR-positive B cell enhancer ABC_E10073 Neighboring gene STARR-seq mESC enhancer starr_03314 Neighboring gene STARR-positive B cell enhancer ABC_E11112 Neighboring gene predicted gene, 34451 Neighboring gene predicted gene, 34602 Neighboring gene nucleophosmin 1 pseudogene Neighboring gene MAP/microtubule affinity regulating kinase 1 Neighboring gene predicted gene, 39728

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    involved_in regulation of response to drug IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of response to drug ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in 9+0 non-motile cilium IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    required for drug-induced death protein 1
    Names
    uncharacterized protein C1orf115 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_178692.3NP_848807.1  required for drug-induced death protein 1

      See identical proteins and their annotated locations for NP_848807.1

      Status: VALIDATED

      Source sequence(s)
      AC131992, AK087640, BX636013, BY710149
      Consensus CDS
      CCDS35816.1
      UniProtKB/Swiss-Prot
      Q8BGN9
      Related
      ENSMUSP00000041904.6, ENSMUST00000048308.6
      Conserved Domains (1) summary
      pfam15828
      Location:62133
      DUF4710; Domain of unknown function (DUF4710)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      184604123..184615233 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)