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    F830045P16Rik RIKEN cDNA F830045P16 gene [ Mus musculus (house mouse) ]

    Gene ID: 228592, updated on 27-Nov-2024

    Summary

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    Official Symbol
    F830045P16Rikprovided by MGI
    Official Full Name
    RIKEN cDNA F830045P16 geneprovided by MGI
    Primary source
    MGI:MGI:3045317
    See related
    Ensembl:ENSMUSG00000043727 AllianceGenome:MGI:3045317
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Sirpb3
    Summary
    Predicted to be active in plasma membrane. Is expressed in adrenal medulla. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See F830045P16Rik in Genome Data Viewer
    Location:
    2 F1; 2 63.08 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (129299717..129378522, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (129457797..129536602, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 29941 Neighboring gene STARR-seq mESC enhancer starr_05671 Neighboring gene interleukin 1 beta, opposite strand Neighboring gene signal peptidase complex subunit 2, pseudogene Neighboring gene interleukin 1 beta Neighboring gene STARR-seq mESC enhancer starr_05672 Neighboring gene predicted gene 14040 Neighboring gene STARR-seq mESC enhancer starr_05673 Neighboring gene predicted gene 14041 Neighboring gene STARR-seq mESC enhancer starr_05675 Neighboring gene signal-regulatory protein alpha

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A nomenclature for signal regulatory protein family members. van den Berg TK, et al. J Immunol, 2005 Dec 15. PMID 16339511
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC228592
    Names
    novel immunoglobulin C1-set domain containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001379444.1 → NP_001366373.1  uncharacterized protein LOC228592 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL808143
      Conserved Domains (2) summary
      cd00096
      Location:360 → 364
      Ig; Ig strand B [structural motif]
      cl11960
      Location:344 → 435
      Ig; Immunoglobulin domain

    2. NM_177653.3 → NP_808321.1  uncharacterized protein LOC228592 isoform 1

      See identical proteins and their annotated locations for NP_808321.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AL808143
      Consensus CDS
      CCDS16728.1
      UniProtKB/TrEMBL
      Q8BJ95
      Related
      ENSMUSP00000058047.6, ENSMUST00000050309.6
      Conserved Domains (2) summary
      cd00098
      Location:147 → 219
      IgC; Immunoglobulin Constant domain
      cl11960
      Location:34 → 138
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      129299717..129378522 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017317744.2 → XP_017173233.1  uncharacterized protein LOC228592 isoform X2

      Conserved Domains (1) summary
      cl11960
      Location:281 → 372
      Ig; Immunoglobulin domain

    2. XM_036161351.1 → XP_036017244.1  uncharacterized protein LOC228592 isoform X1

      Conserved Domains (2) summary
      cd00096
      Location:282 → 289
      Ig; Ig strand A [structural motif]
      cl11960
      Location:281 → 372
      Ig; Immunoglobulin domain
    Nucleotide Protein Strain
    Heading Accession and Version

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