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    1700034J05Rik RIKEN cDNA 1700034J05 gene [ Mus musculus (house mouse) ]

    Gene ID: 73344, updated on 27-Nov-2024

    Summary

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    Official Symbol
    1700034J05Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700034J05 geneprovided by MGI
    Primary source
    MGI:MGI:1920594
    See related
    Ensembl:ENSMUSG00000040163 AllianceGenome:MGI:1920594
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human C12orf71 (chromosome 12 open reading frame 71). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis adult (RPKM 40.0) See more
    Orthologs
    human all
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    Genomic context

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    See 1700034J05Rik in Genome Data Viewer
    Location:
    6 G3; 6 77.7 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (146852799..146855937, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (146951301..146954439, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_17808 Neighboring gene STARR-seq mESC enhancer starr_17809 Neighboring gene basic helix-loop-helix ARNT like 2 Neighboring gene single-pass membrane protein with coiled-coil domains 2 Neighboring gene STARR-positive B cell enhancer mm9_chr6:146842338-146842638 Neighboring gene PTPRF interacting protein, binding protein 1 (liprin beta 1) Neighboring gene predicted gene, 35876 Neighboring gene RAB15 effector protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Miyata H, et al. Proc Natl Acad Sci U S A, 2016 Jul 12. PMID 27357688, Free PMC Article
    2. Mouse screen reveals multiple new genes underlying mouse and human hearing loss. Ingham NJ, et al. PLoS Biol, 2019 Apr. PMID 30973865, Free PMC Article
    3. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
    4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (2)  1 citation

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C12orf71 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001164236.1 → NP_001157708.1  uncharacterized protein C12orf71 homolog isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice site, compared to variant 1. The resulting isoform (2) lacks one internal residue, compared to isoform 1.
      Source sequence(s)
      AK076643, BB573720, BC052362
      Consensus CDS
      CCDS51956.1
      UniProtKB/Swiss-Prot
      Q80W69
      Related
      ENSMUSP00000107249.2, ENSMUST00000111622.2
      Conserved Domains (1) summary
      pfam15480
      Location:19 → 300
      DUF4640; Domain of unknown function (DUF4640)

    2. NM_028509.1 → NP_082785.1  uncharacterized protein C12orf71 homolog isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      BB573720, BC052362
      Consensus CDS
      CCDS51957.1
      UniProtKB/Swiss-Prot
      Q80W69, Q8C629, Q8CDR6, Q9D9Q1
      Related
      ENSMUSP00000043802.9, ENSMUST00000036592.15
      Conserved Domains (1) summary
      pfam15480
      Location:19 → 301
      DUF4640; Domain of unknown function (DUF4640)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      146852799..146855937 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036152355.1 → XP_036008248.1  uncharacterized protein C12orf71 homolog isoform X8

      Conserved Domains (1) summary
      pfam15480
      Location:19 → 261
      DUF4640; Domain of unknown function (DUF4640)

    2. XM_036152356.1 → XP_036008249.1  uncharacterized protein C12orf71 homolog isoform X9

      Conserved Domains (1) summary
      pfam15480
      Location:19 → 219
      DUF4640; Domain of unknown function (DUF4640)

    3. XM_036152353.1 → XP_036008246.1  uncharacterized protein C12orf71 homolog isoform X8

      Conserved Domains (1) summary
      pfam15480
      Location:19 → 261
      DUF4640; Domain of unknown function (DUF4640)

    4. XM_030255626.1 → XP_030111486.1  uncharacterized protein C12orf71 homolog isoform X6

      Conserved Domains (1) summary
      pfam15480
      Location:19 → 300
      DUF4640; Domain of unknown function (DUF4640)

    5. XM_006507112.4 → XP_006507175.1  uncharacterized protein C12orf71 homolog isoform X4

      UniProtKB/Swiss-Prot
      Q80W69, Q8C629, Q8CDR6, Q9D9Q1
      Conserved Domains (1) summary
      pfam15480
      Location:19 → 301
      DUF4640; Domain of unknown function (DUF4640)

    6. XM_036152352.1 → XP_036008245.1  uncharacterized protein C12orf71 homolog isoform X8

      Conserved Domains (1) summary
      pfam15480
      Location:19 → 261
      DUF4640; Domain of unknown function (DUF4640)

    7. XM_017321776.2 → XP_017177265.1  uncharacterized protein C12orf71 homolog isoform X4

      UniProtKB/Swiss-Prot
      Q80W69, Q8C629, Q8CDR6, Q9D9Q1
      Conserved Domains (1) summary
      pfam15480
      Location:19 → 301
      DUF4640; Domain of unknown function (DUF4640)

    8. XM_036152351.1 → XP_036008244.1  uncharacterized protein C12orf71 homolog isoform X8

      Conserved Domains (1) summary
      pfam15480
      Location:19 → 261
      DUF4640; Domain of unknown function (DUF4640)

    9. XM_036152349.1 → XP_036008242.1  uncharacterized protein C12orf71 homolog isoform X6

      Conserved Domains (1) summary
      pfam15480
      Location:19 → 300
      DUF4640; Domain of unknown function (DUF4640)

    10. XM_011241632.3 → XP_011239934.1  uncharacterized protein C12orf71 homolog isoform X4

      UniProtKB/Swiss-Prot
      Q80W69, Q8C629, Q8CDR6, Q9D9Q1
      Conserved Domains (1) summary
      pfam15480
      Location:19 → 301
      DUF4640; Domain of unknown function (DUF4640)

    11. XM_017321777.2 → XP_017177266.1  uncharacterized protein C12orf71 homolog isoform X5

      Conserved Domains (1) summary
      pfam15480
      Location:59 → 301
      DUF4640; Domain of unknown function (DUF4640)

    12. XM_017321775.2 → XP_017177264.1  uncharacterized protein C12orf71 homolog isoform X3

      Conserved Domains (1) summary
      pfam15480
      Location:59 → 302
      DUF4640; Domain of unknown function (DUF4640)

    13. XM_017321774.2 → XP_017177263.1  uncharacterized protein C12orf71 homolog isoform X2

      Conserved Domains (1) summary
      pfam15480
      Location:59 → 340
      DUF4640; Domain of unknown function (DUF4640)

    14. XM_017321773.2 → XP_017177262.1  uncharacterized protein C12orf71 homolog isoform X1

      Conserved Domains (1) summary
      pfam15480
      Location:59 → 341
      DUF4640; Domain of unknown function (DUF4640)

    15. XM_036152350.1 → XP_036008243.1  uncharacterized protein C12orf71 homolog isoform X7

      Conserved Domains (1) summary
      pfam15480
      Location:59 → 259
      DUF4640; Domain of unknown function (DUF4640)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q80W69.1 GenPept UniProtKB/Swiss-Prot:Q80W69

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