Igsf6 immunoglobulin superfamily, member 6 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Igsf6provided by MGI
Official Full Name: immunoglobulin superfamily, member 6provided by MGI
Primary source: MGI:MGI:1891393
See related: Ensembl:ENSMUSG00000035004 AllianceGenome:MGI:1891393
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary: Predicted to be located in membrane. Orthologous to human IGSF6 (immunoglobulin superfamily member 6). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Broad expression in liver E18 (RPKM 6.0), liver E14 (RPKM 3.2) and 19 other tissues See more
Orthologs: human all
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Genomic context

Location:: 7 F2; 7 65.07 cM

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	7	NC_000073.7 (120663290..120673753, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	7	NC_000073.6 (121064067..121074581, complement)

Chromosome 7 - NC_000073.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The IGSF6 expression is different in mouse embryos of the different ages. In situ hybridization performed on mice embryos sections showed the differential presence of IGSF6 in developing lung and kidney.
Title: Characterization of the human PAP1 gene and its homologue possible involvement in mouse embryonic development.

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (3)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

BE105359 (e-PCR)
- UniSTS:245814

D7Mit58 (e-PCR), detects polymorphism
- UniSTS:131282

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: immunoglobulin superfamily member 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_030691.1 → NP_109616.1 immunoglobulin superfamily member 6 precursor

See identical proteins and their annotated locations for NP_109616.1

Status: PROVISIONAL

Source sequence(s)

AJ278575

Consensus CDS

CCDS21801.1

UniProtKB/Swiss-Prot

P0C6B7

Related

ENSMUSP00000039059.3, ENSMUST00000047194.4

Conserved Domains (2) summary

smart00410
Location:35 → 141

IG_like; Immunoglobulin like

cl11960
Location:35 → 142

Ig; Immunoglobulin domain