U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Katnip katanin interacting protein [ Mus musculus (house mouse) ]

    Gene ID: 233865, updated on 9-Dec-2024

    Summary

    Official Symbol
    Katnipprovided by MGI
    Official Full Name
    katanin interacting proteinprovided by MGI
    Primary source
    MGI:MGI:2442760
    See related
    Ensembl:ENSMUSG00000032743 AllianceGenome:MGI:2442760
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Kiaa0556; D430042O09Rik
    Summary
    Acts upstream of or within cerebrospinal fluid circulation. Predicted to be located in several cellular components, including cell projection; cytoskeleton; and extracellular region. Is expressed in central nervous system; retina inner nuclear layer; and retina outer nuclear layer. Used to study Joubert syndrome 26. Human ortholog(s) of this gene implicated in Joubert syndrome 26. Orthologous to human KATNIP (katanin interacting protein). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in testis adult (RPKM 13.6), ovary adult (RPKM 5.7) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Katnip in Genome Data Viewer
    Location:
    7 F3; 7 69.01 cM
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (125307027..125473967)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (125707855..125874795)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E6598 Neighboring gene STARR-positive B cell enhancer ABC_E2847 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:132773929-132774138 Neighboring gene STARR-positive B cell enhancer ABC_E11367 Neighboring gene interleukin 21 receptor Neighboring gene general transcription factor III C 1 Neighboring gene STARR-positive B cell enhancer ABC_E2848 Neighboring gene VISTA enhancer mm174 Neighboring gene STARR-seq mESC enhancer starr_20126 Neighboring gene GSG1-like Neighboring gene predicted gene, 51456 Neighboring gene STARR-seq mESC enhancer starr_20127 Neighboring gene exportin 6 Neighboring gene LAG1 homolog, ceramide synthase 2 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Gene trapped (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC31549

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within cerebrospinal fluid circulation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    katanin-interacting protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081022.2NP_001074491.1  katanin-interacting protein isoform 1

      See identical proteins and their annotated locations for NP_001074491.1

      Status: VALIDATED

      Source sequence(s)
      AC127333, AC150648
      Consensus CDS
      CCDS40123.1
      UniProtKB/Swiss-Prot
      Q80TX9, Q8C753, Q8C759, Q8CFE1, Q8K0N9
      UniProtKB/TrEMBL
      B2RXY0
      Related
      ENSMUSP00000065744.7, ENSMUST00000069660.13
      Conserved Domains (1) summary
      pfam14652
      Location:12051524
      DUF4457; Domain of unknown function (DUF4457)
    2. NM_001358287.1NP_001345216.1  katanin-interacting protein isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC127333, AC150648
      Consensus CDS
      CCDS90326.1
      UniProtKB/TrEMBL
      B2RXY0, F6XQI1
      Related
      ENSMUSP00000118668.3, ENSMUST00000124223.8
      Conserved Domains (1) summary
      pfam14652
      Location:11791498
      DUF4457; Domain of unknown function (DUF4457)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      125307027..125473967
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030242515.1XP_030098375.1  katanin-interacting protein isoform X5

      UniProtKB/TrEMBL
      B2RXY0
      Conserved Domains (1) summary
      pfam14652
      Location:11331452
      DUF4457; Domain of unknown function (DUF4457)
    2. XM_011241771.4XP_011240073.1  katanin-interacting protein isoform X2

      UniProtKB/TrEMBL
      B2RXY0
      Conserved Domains (1) summary
      pfam14652
      Location:12141533
      DUF4457; Domain of unknown function (DUF4457)
    3. XM_036153011.1XP_036008904.1  katanin-interacting protein isoform X3

      UniProtKB/TrEMBL
      B2RXY0, F6XQI1
      Conserved Domains (1) summary
      pfam14652
      Location:11791498
      DUF4457; Domain of unknown function (DUF4457)
    4. XM_006507718.2XP_006507781.1  katanin-interacting protein isoform X3

      See identical proteins and their annotated locations for XP_006507781.1

      UniProtKB/TrEMBL
      B2RXY0, F6XQI1
      Conserved Domains (1) summary
      pfam14652
      Location:11791498
      DUF4457; Domain of unknown function (DUF4457)
    5. XM_017322208.2XP_017177697.1  katanin-interacting protein isoform X6

      Conserved Domains (1) summary
      pfam14652
      Location:9861278
      DUF4457; Domain of unknown function (DUF4457)
    6. XM_017322207.2XP_017177696.1  katanin-interacting protein isoform X1

      UniProtKB/TrEMBL
      B2RXY0
      Conserved Domains (1) summary
      pfam14652
      Location:12221541
      DUF4457; Domain of unknown function (DUF4457)
    7. XM_011241774.3XP_011240076.1  katanin-interacting protein isoform X4

      UniProtKB/TrEMBL
      B2RXY0
      Conserved Domains (1) summary
      pfam14652
      Location:11501469
      DUF4457; Domain of unknown function (DUF4457)