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    LINC01718 long intergenic non-protein coding RNA 1718 [ Homo sapiens (human) ]

    Gene ID: 100506470, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC01718provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1718provided by HGNC
    Primary source
    HGNC:HGNC:52505
    See related
    Ensembl:ENSG00000229606 AllianceGenome:HGNC:52505
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 2.9) See more
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    Genomic context

    See LINC01718 in Genome Data Viewer
    Location:
    20q13.33
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (61079064..61080179)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (62863273..62864388)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (59654120..59655235)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372699 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_60829 Neighboring gene uncharacterized LOC105372700 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:59381122-59382321 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:59443414-59443929 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:59443930-59444444 Neighboring gene MPRA-validated peak4294 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:59632462-59633382 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr20:59676211-59677410 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:59688891-59689390 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr20:59698201-59698846 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:59738200-59739399 Neighboring gene uncharacterized LOC105372701 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr20:59794837-59796036 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:59829421-59830113 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:59837300-59837811 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:59843245-59843775 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:59842714-59843244 Neighboring gene OCT4-H3K4me1 hESC enhancer GRCh37_chr20:59881901-59882407 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:59892319-59893194 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:59928779-59929522 Neighboring gene Sharpr-MPRA regulatory region 1887 Neighboring gene cadherin 4 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:59964898-59966097 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:59966867-59967466 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:59971635-59972134 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:59971133-59971634 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:59981242-59981742 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:59981743-59982243 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:59999531-60000423 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60000424-60001315 Neighboring gene uncharacterized LOC105372703 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60008559-60009148 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60009149-60009738 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr20:60011920-60013119

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_109919.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL121910, BX106486, HY047124
      Related
      ENST00000441660.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      61079064..61080179
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      62863273..62864388
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)