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    MAP3K5-AS2 MAP3K5 antisense RNA 2 [ Homo sapiens (human) ]

    Gene ID: 101928429, updated on 10-Dec-2024

    Summary

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    Official Symbol
    MAP3K5-AS2provided by HGNC
    Official Full Name
    MAP3K5 antisense RNA 2provided by HGNC
    Primary source
    HGNC:HGNC:56125
    See related
    AllianceGenome:HGNC:56125
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in esophagus (RPKM 7.6), lung (RPKM 3.5) and 15 other tissues See more
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    Genomic context

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    See MAP3K5-AS2 in Genome Data Viewer
    Location:
    6q23.3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (136784047..136786054)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (137972228..137974235)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (137105185..137107192)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase kinase 5 Neighboring gene MAP3K5 antisense RNA 1 Neighboring gene RNA, 5S ribosomal pseudogene 219 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_90326 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25116 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_90334 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25117 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25118 Neighboring gene uncharacterized LOC124901410 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25119 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25120 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25121 Neighboring gene Sharpr-MPRA regulatory region 8718 Neighboring gene Sharpr-MPRA regulatory region 14394 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:137112365-137112880 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25122 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17575 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25123 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25124 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25125 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:137143334-137144066 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:137144067-137144799 Neighboring gene MPRA-validated peak6150 silencer Neighboring gene MPRA-validated peak6151 silencer Neighboring gene small nucleolar RNA SNORA27 Neighboring gene peroxisomal biogenesis factor 7 Neighboring gene ribosomal protein L7a pseudogene 37

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_134635.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BE047591, CA306535, DA468624

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      136784047..136786054
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      137972228..137974235
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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