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    flwr-1 Calcium channel flower [ Caenorhabditis elegans ]

    Gene ID: 181591, updated on 2-Nov-2024

    Summary

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    Official Symbol
    flwr-1
    Official Full Name
    Calcium channel flower
    Primary source
    WormBase:WBGene00008973
    Locus tag
    CELE_F20D1.1
    See related
    AllianceGenome:WB:WBGene00008973
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable calcium channel activity. Predicted to be involved in vesicle-mediated transport. Predicted to be located in cell projection; presynaptic membrane; and synaptic vesicle membrane. Is expressed in several structures, including anterior gonad arm. Orthologous to human CACFD1 (calcium channel flower domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See flwr-1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    4
    Sequence:
    Chromosome: X; NC_003284.9 (14968900..14970271, complement)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Regulator of G-protein signaling rgs-11 Neighboring gene Peptidase A2 domain-containing protein Neighboring gene ncRNA Neighboring gene PilS cassette Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene TBC1 domain family member 23

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
    2. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in calcium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in presynaptic membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in synaptic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Calcium channel flower
    NP_510484.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      14968900..14970271 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_078083.7 → NP_510484.1  Calcium channel flower [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_510484.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q93533
      Conserved Domains (1) summary
      smart01077
      Location:34 → 142
      Cg6151-P; Uncharacterized conserved protein CG6151-P
    Nucleotide Protein
    Heading Accession and Version

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