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    Y46E12BL.2 Ribosomal RNA-processing protein 12-like conserved domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 266878, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y46E12BL.2
    Official Full Name
    Ribosomal RNA-processing protein 12-like conserved domain-containing protein
    Primary source
    WormBase:WBGene00021595
    Locus tag
    CELE_Y46E12BL.2
    See related
    AllianceGenome:WB:WBGene00021595
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be active in membrane. Orthologous to human RRP12 (ribosomal RNA processing 12 homolog). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y46E12BL.2 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    9
    Sequence:
    Chromosome: II; NC_003280.10 (15233153..15244931)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene B30.2/SPRY domain-containing protein;SPRY domain-containing SOCS box protein 1;SPRY domain-containing SOCS box protein 4 Neighboring gene ncRNA Neighboring gene SPRY domain-containing SOCS box protein 1 Neighboring gene TGF-beta family profile domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of novel nicotinic receptor-associated proteins in Caenorhabditis elegans. Gottschalk A, et al. EMBO J, 2005 Jul 20. PMID 15990870, Free PMC Article
    2. A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. Holzer E, et al. PLoS Genet, 2022 Apr. PMID 35442950, Free PMC Article
    3. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Ribosomal RNA-processing protein 12-like conserved domain-containing protein
    NP_497319.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      15233153..15244931
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_064918.8 → NP_497319.1  Ribosomal RNA-processing protein 12-like conserved domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_497319.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q965N8
      Conserved Domains (1) summary
      pfam08161
      Location:457 → 653
      NUC173; NUC173 domain

    RNA

    1. NR_131432.1 RNA Sequence

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version

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