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    C08A9.3 SID1 transmembrane family member 1 [ Caenorhabditis elegans ]

    Gene ID: 182383, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C08A9.3
    Official Full Name
    SID1 transmembrane family member 1
    Primary source
    WormBase:WBGene00015583
    Locus tag
    CELE_C08A9.3
    See related
    AllianceGenome:WB:WBGene00015583
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable RNA transmembrane transporter activity and double-stranded RNA binding activity. Predicted to be involved in RNA transport. Predicted to be located in membrane. Predicted to be active in lysosome and plasma membrane. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See C08A9.3 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    17
    Sequence:
    Chromosome: X; NC_003284.9 (17087882..17093299, complement)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene Superoxide dismutase [Mn] 2, mitochondrial Neighboring gene Myb_DNA-bind_3 domain-containing protein Neighboring gene Myb_DNA-bind_3 domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables RNA transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables double-stranded RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in lysosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    SID1 transmembrane family member 1
    NP_001257283.1
    • Partially confirmed by transcript evidence
    NP_001257284.1
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      17087882..17093299 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001270354.2 → NP_001257283.1  SID1 transmembrane family member 1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001257283.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      D1MN44
      Conserved Domains (1) summary
      pfam13965
      Location:115 → 694
      SID-1_RNA_chan; dsRNA-gated channel SID-1

    2. NM_001270355.1 → NP_001257284.1  SID1 transmembrane family member 1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001257284.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KYK1
      Conserved Domains (1) summary
      pfam13965
      Location:160 → 739
      SID-1_RNA_chan; dsRNA-gated channel SID-1
    Nucleotide Protein
    Heading Accession and Version

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