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    C09B8.4 Transmembrane protein 53 [ Caenorhabditis elegans ]

    Gene ID: 180870, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C09B8.4
    Official Full Name
    Transmembrane protein 53
    Primary source
    WormBase:WBGene00015623
    Locus tag
    CELE_C09B8.4
    See related
    AllianceGenome:WB:WBGene00015623
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Human ortholog(s) of this gene implicated in craniotubular dysplasia Ikegawa type. Orthologous to human TMEM53 (transmembrane protein 53). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See C09B8.4 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    6
    Sequence:
    Chromosome: X; NC_003284.9 (6018442..6019936, complement)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene DUF1430 domain-containing protein Neighboring gene F-box C protein Neighboring gene inositol-polyphosphate 5-phosphatase;putative type I inositol 1,4,5-trisphosphate 5-phosphatase Neighboring gene SHSP domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. Holzer E, et al. PLoS Genet, 2022 Apr. PMID 35442950, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    Transmembrane protein 53
    NP_509006.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      6018442..6019936 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_076605.5 → NP_509006.2  Transmembrane protein 53 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_509006.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q17846
      Conserved Domains (1) summary
      pfam05705
      Location:55 → 286
      DUF829; Eukaryotic protein of unknown function (DUF829)
    Nucleotide Protein
    Heading Accession and Version

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