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    T15B12.1 Calponin-homology (CH) domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 188527, updated on 9-Dec-2024

    Summary

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    Official Symbol
    T15B12.1
    Official Full Name
    Calponin-homology (CH) domain-containing protein
    Primary source
    WormBase:WBGene00020530
    Locus tag
    CELE_T15B12.1
    See related
    AllianceGenome:WB:WBGene00020530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Located in mitochondrion. Orthologous to human SMTNL2 (smoothelin like 2). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See T15B12.1 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    11
    Sequence:
    Chromosome: III; NC_003281.10 (5288180..5298360)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene 5-demethoxyubiquinone hydroxylase, mitochondrial Neighboring gene Transposase Neighboring gene tRNA-Met Neighboring gene non-specific serine/threonine protein kinase Neighboring gene Uncharacterized protein Neighboring gene tRNA-Thr Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Determining the sub-cellular localization of proteins within Caenorhabditis elegans body wall muscle. Meissner B, et al. PLoS One, 2011. PMID 21611156, Free PMC Article
    2. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    3. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    Calponin-homology (CH) domain-containing protein
    NP_001367880.1
    • Confirmed by transcript evidence
    NP_001379971.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      5288180..5298360
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001379703.1 → NP_001367880.1  Calponin-homology (CH) domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      G4SJU0
      Conserved Domains (1) summary
      cd21200
      Location:324 → 429
      CH_SMTN-like; calponin homology (CH) domain found in the smoothelin family

    2. NM_001392095.1 → NP_001379971.1  Calponin-homology (CH) domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5ECY7
      Conserved Domains (1) summary
      cd21200
      Location:114 → 219
      CH_SMTN-like; calponin homology (CH) domain found in the smoothelin family
    Nucleotide Protein
    Heading Accession and Version

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